Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01675 ATGAATCGAAGGTCAATTCGTTGCTGTGCGATTCGACAAAACAAAACCCTTACCCTTGGTTGTCTTATTCTTGATTCTTCTTCATCTCCGTTCAAGAGGTCTACGCTTGGAGATCTTGCTGAAATGGCTGATTCTCCACCGAGAAGGAATTCAAGGTCCCCTTCCCCATGGAGGGCTCAGTCAAGATCAAGATCTAGGCCTAGGTCTAGGTCCCGGTCAGGATCATTTGAAAAGCAAAGGCCAAGATCCCGCTCGAGAAGTCGTGGAAGATCAAGGTCAAGAAGTAATGAAAGGACCGAGTCTAGAAATTCAGGGAGTACACTTTATGTCACTGGCCTATCTTCAAGGGTCACTGAGAGGGACCTAGAGGAACATTTCTCTAAGGAGGGAAAGGTTGCTTCGTGTTTTCTTGTGGTGGAGCCTCGCACACGCATTTCTCGAGGTTTTGCTTTTATTACAATGGATACTGTTGAGGATGCAAACCGCTGCATCAAATATCTCAATCAATCTGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCACGAAGGAAGCGTGCTAGAACTCCTACACCTGGACACTATCTTGGCCTGAAAAGTACTAGAGACTATGGATATCGGGGGGACCGTGGAAGGTATCGAGGAGGTGGATCTGGTCGCGATGATTATGCTTATCGTGGTGAGCGTGGAGAGCGTGGAGAGCGTGGAAGGTCTCCGCGGCGCTCACCTTATCGAGGTGGTAGAGAATATTCACCTAGGCATTCACCGCCACCTTATGGTGGAAGAACAAGGAGGGATAGGTCCAGGTCACTTCCATATTCTCCATATGCTAGCCCAGACAGGAGGTATGCTCGTGGATCTAGGTGA 867 0.4856 MNRRSIRCCAIRQNKTLTLGCLILDSSSSPFKRSTLGDLAEMADSPPRRNSRSPSPWRAQSRSRSRPRSRSRSGSFEKQRPRSRSRSRGRSRSRSNERTESRNSGSTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDTVEDANRCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKSTRDYGYRGDRGRYRGGGSGRDDYAYRGERGERGERGRSPRRSPYRGGREYSPRHSPPPYGGRTRRDRSRSLPYSPYASPDRRYARGSR* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01675 288 SMART rrm1_1 107 180 IPR000504 GO:0003723
Lapu2g01675 288 MobiDBLite consensus disorder prediction 203 248 - -
Lapu2g01675 288 MobiDBLite consensus disorder prediction 182 288 - -
Lapu2g01675 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Lapu2g01675 288 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 100 282 - -
Lapu2g01675 288 SUPERFAMILY RNA-binding domain, RBD 103 216 IPR035979 GO:0003676
Lapu2g01675 288 Gene3D - 43 190 IPR012677 -
Lapu2g01675 288 MobiDBLite consensus disorder prediction 32 112 - -
Lapu2g01675 288 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 44 190 - -
Lapu2g01675 288 MobiDBLite consensus disorder prediction 48 62 - -
Lapu2g01675 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 177 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01675 Lapu-Chr2 30472932 30477125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01675 108 191 Eukaryotic Initiation Factors Gene Family AT1G49760 29.762 1.95e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01675 K12897 - gmx:100527350 325.479