Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01647 ATGGCTCTTCCTGGTTCCCTGCAGTTGTCCCATGGATTGGGACTTTGCAGGAACCTGGGCTGCAATAAACATTCGAGGGCAACGGGACATGGCAAGTTACATTTATTTAGTGCAGGTCTTTCATATCCTATTTCGTTCACGAGACAGGAGTGCAGGGGTTTTCAACACCTTCATCATGTAAACAAGCCAACACATACATTATCGGGCAAAGCCCGATCTTTTAAGTGTCATTGTTTTATAGTGTCAGGCCAACCAAATGATCTTCCTGCTGTTAAGGCGGCCGCTACCTTGTTGGCAAGATCTAGTTTACAAAATAGTCCTATCATAGTAAAGTTGATTCCTGCAATTGGCGTTATCATTTTTGCAATATGGGGTGTTGGTCCATTATTGTTCCAGACAAGGAAAATACTTTTTCAGAGGAGTGATAATAGCTGGAAGAAAAGTACCACTCACTATATAGTAACATCTTACCTTCGGCCATTACTGTTATGGACTGGAGCAATACTTATTTGCAGAGCGTTGGAGCCATTAATTCTACCTTCAGAACCTGGCCAGGTTGTTAAGGAACGGCTACTGAATTTTGTGAGATCATTGTCAACAGTTCTGGCCTTCGCCTATTGTTTGTCAAGTGTAATTCAACAATCACAGAAATTCTTAGCGGAGGGCACTGATGCAAGTGAGGCGAGAAATATGGGATTCCAATTTGCTGGCAAAGCCATTTATTCTGCGGTATGGATTGCTGCATTTTCATTGTTCATGGAATTGTTAGGCTTCTCTACCCAGAAATGGGTTACTGCAGGAGGTCTTGGGACAGTTTTGCTGACCCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGTGTGATGATTCATGCAACTCGGCCTTTTGTGGTTAATGAATGGATACAAACAAAGATTGAAGGATATGAGGTTTCTGGTACTGTGGAGCATGTTGGCTGGTGGTCACCAACAATTATTAGAGGTGAAGATCGTGAAGCTGTTCACATTCCAAACCACAAATTTACAGTGAATGTTGTGCGGAACCTTAGTCAAAAAACACATTGGCGAATCAAAACCCATCTAGCCATTAGTCATTTGGATGTAAATAAGATTAATAACATTGTAGCTGACATGCGGAAAGTATTGGCAAAAAATCCACAAGTTGAGCAACAGAGGTTGCACCGGAGAGTGTTTTTGGACAACATAAATCCTGAAAATCAGGCTCTTCTGATTCTGGTGTCTTGTTTTGTTAAGACCTCACATTTTGAAGAATATCTGTGTGTTAAGGAAGCAATACTGTTGGATCTTCTTAGAGTTATAGGCCATCACCGAGCCAGACTTGCAACACCTGTCCGTACCCTGCAGAAAATATACAGTGATGCTGACTTGGAGAATATACCGTTTGCAGATTCCACCTTTGGTCGTGGTGCTGGCACTGTACCTAACCGTCCATTATTAGTGATTGAACCGTCTTACAAAATCAATGGAGATGATAAGATGAAAAGTCGATCAGTACGACCAGTTGGTGATCAAGATAATAAGACTTCTAACCCTGATGCAAATGGAAACTCTAAGACAGTTGTGACATCTAACTCTGACACAAATGGAAAGACAGTTGTGACATCCAAACCTGATCCTGAAGTGGGTGAAAACAAGCCTCTGAAATCAGATTCAAACAAGGAAAACGTGGAGGTTCCAGACTCTTCTAAATCTAAAGTATCTGGTTTGGTAGTAGAAAATTTAGCCCAGAAGGACACAGATGCCAAACAATCCAAGGGTCAGAACCCTAAAAACATAAAGCCAAATATTGAGTCTGACAATTTAGTGTCCTCCTCATCTAACAGTGCTGACAAAACTGGTGGACTTAATACGAATATACCATCAAAACAGATAGGGGAAAAGAAACCTGCTGCACAGCCTCATGCATCCCGGACTGTTCTTGAAGAGAATATAGTGCTGGGTGTTGCATTGGAGGGATCAAAGAGGACACTTCCCATTGATGAGGAGATTGACAATGTGACATCTAGAGAGGCAAAGGAAATGGCTGCATTCCAGGGTGGAAATGGATCTCCAAAGGCTCTAGATGGAAATGACTAG 2100 0.419 MALPGSLQLSHGLGLCRNLGCNKHSRATGHGKLHLFSAGLSYPISFTRQECRGFQHLHHVNKPTHTLSGKARSFKCHCFIVSGQPNDLPAVKAAATLLARSSLQNSPIIVKLIPAIGVIIFAIWGVGPLLFQTRKILFQRSDNSWKKSTTHYIVTSYLRPLLLWTGAILICRALEPLILPSEPGQVVKERLLNFVRSLSTVLAFAYCLSSVIQQSQKFLAEGTDASEARNMGFQFAGKAIYSAVWIAAFSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHFEEYLCVKEAILLDLLRVIGHHRARLATPVRTLQKIYSDADLENIPFADSTFGRGAGTVPNRPLLVIEPSYKINGDDKMKSRSVRPVGDQDNKTSNPDANGNSKTVVTSNSDTNGKTVVTSKPDPEVGENKPLKSDSNKENVEVPDSSKSKVSGLVVENLAQKDTDAKQSKGQNPKNIKPNIESDNLVSSSSNSADKTGGLNTNIPSKQIGEKKPAAQPHASRTVLEENIVLGVALEGSKRTLPIDEEIDNVTSREAKEMAAFQGGNGSPKALDGND* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01647 699 Pfam Mechanosensitive ion channel 238 444 IPR006685 GO:0016020|GO:0055085
Lapu2g01647 699 MobiDBLite consensus disorder prediction 497 648 - -
Lapu2g01647 699 Gene3D - 192 295 - -
Lapu2g01647 699 Gene3D - 297 352 IPR023408 -
Lapu2g01647 699 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 682 IPR045042 -
Lapu2g01647 699 MobiDBLite consensus disorder prediction 510 542 - -
Lapu2g01647 699 MobiDBLite consensus disorder prediction 549 568 - -
Lapu2g01647 699 MobiDBLite consensus disorder prediction 588 631 - -
Lapu2g01647 699 SUPERFAMILY Sm-like ribonucleoproteins 281 351 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01647 Lapu-Chr2 30236592 30245297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01647 9 690 Mechanosensitive Ion Channel Family AT5G10490 58.129 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01647 K22047 - gmx:100796304 1216.45