Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01640 ATGCAACATCTTCGAAGTTACTATAACTCAGAAGCTCAAATGATAAGAGGTGGTTTTCCTCGGCCATTCATTTCTGGGACATACAAAACCAGTTTCTTGAAGCAAAGATCAAATGCAGAGATCAAAGTTGTGGCCGCAAAGAAACATAGTGAAGCTGAGAAGAGACGTAGAATGAGAATCAATGGTCAATACGAAACCCTCAGAACCATCCTCCCCAACTTGATCAAACATTGTGAATTAGATTCTGTTATGAACAAACAGAAGGACAAGGCATCGGTGTTGGCAGAGACCATCAAGCAAGTGAAGGAGCTGAAGAAGAGGGTATCAAAACTGGAACAAGGTAGTTCTGGTAACTCATCAAAGGATGTGGTTAAGTTTCCTAGTGGGGCAGACAGGTTGAATTTGGAAAAATGTAATAATGAGGAGGGCCTAGTGAAGGCCACATTGAGTTGTGAGGATAGTGTGGGATTGATGTCAGCAATATCAAGGGCAGTAGGGTCGGTAAAGACCAAAGTGGTAAAGGCTGAGATAGTGAGTATGGGTGGGAGAACCAGAAGTGTGTTGTGGGTTCAAGGTCTTGGAAATGATCGTATGGGGATACTCAAGAGCTCTTTGAAGATTGCCATGCACAGACCAGCCTTTAAGATGCGCCGTTCTACTCATTAG 666 0.4339 MQHLRSYYNSEAQMIRGGFPRPFISGTYKTSFLKQRSNAEIKVVAAKKHSEAEKRRRMRINGQYETLRTILPNLIKHCELDSVMNKQKDKASVLAETIKQVKELKKRVSKLEQGSSGNSSKDVVKFPSGADRLNLEKCNNEEGLVKATLSCEDSVGLMSAISRAVGSVKTKVVKAEIVSMGGRTRSVLWVQGLGNDRMGILKSSLKIAMHRPAFKMRRSTH* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01640 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 104 IPR011598 GO:0046983
Lapu2g01640 221 Coils Coil 94 114 - -
Lapu2g01640 221 PANTHER TRANSCRIPTION FACTOR BHLH30 34 213 IPR045847 GO:0003700|GO:0006355
Lapu2g01640 221 Pfam Helix-loop-helix DNA-binding domain 48 104 IPR011598 GO:0046983
Lapu2g01640 221 Gene3D - 44 115 IPR036638 GO:0046983
Lapu2g01640 221 SMART finulus 50 110 IPR011598 GO:0046983
Lapu2g01640 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 113 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01640 Lapu-Chr2 30127709 30128726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01640 43 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 37.086 1.11e-21 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu2g01640 HLH 3.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01640 - - gmx:102667782 310.457