Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01629 ATGGAAGAAGCAATGAGGCGCCTCAATGGTGTGGTTCCTATTCTTGGACCCGACCCGAAAGAGTCAACTGTCGGTGAAAACCCTAAACGCTCCACCGCCGTCAACAAGCGGACTTTAAGAGAAGATGGCAGCGGAGCCATGAGGTATCGTGGTGTGAGGCGCAGGCCGTGGGGACGTTACGCTGCCGAGATTAGAGACCCTCAGTCCAAGGAGAGACGGTGGCTGGGAACCTTCGACACCGCGGAGGAAGCTGCTTGCGCATACGACTGCGCCGCCAGAGCCATGCGCGGTCTCAAGGCACGCACCAACTTTGTGTACCCCACTTCGCCGCAACCATCTTCGGCTATCCCCGAACACTTCTTCCATTCTTTTAATAATAATAACTTCACCAAAAACTCTCCGTCACCACCCTTCAACAACCACCGCAGCCGTCACTCAACCGGTTCTGCCACCTGCTTTGACCACCCTAGCGCTGTTGACTTTTCATTTTCCAACCCGCGAAACCCTTCTTCCTCACTCAACATGCTTCTCCTTCGCGACCTCATTAACTCTTCCTCGAACAGCCCTTTGCTTTCTTCTTCCACCCATAACTTCCACGACCAGTTCTACAACAAGGGTGCTTCCACTTTTTCAACGTTACCTACTGTTTCTTCTTCTTCTTCTTCACCACCTCTTATTCCTAGTTATTCAGTGAATTATCCTTTTGAAGGCTCTTCATCTGTTAATGTGAACACCCTATGTGGAAATAATTTCAGTGAAAAGGGTGTTGATGATTGTGGGTCTGGATTTTTCTCTCGAGAGTCTTCAGATTCGGGATTGTTGGAAGAGATAGTTAACAAGTTCTTGCCCAAAACGAAGCCTAATAAATGTGAGAGATTGCCAAAAATGGAGAGTTATCGAAACCCTCAAGAGGCTGTTCTTCCATCCCTTATTTCTGAATCAACACTTGTTTCCACCGCGCAATGCTATGATGAAATGACAAAGGGGTGTCAGAATAATGAAAGTTTTGGTAATTCTTTTGATCATCAGGGTTTTTCCATGCAGAAATTTGACAGCTTTAATGGGTTTGATAGCGTGCAGGGTATGGCTATGGGAAATGGACAAACCATGACGAATCATGCAGAGAATTGCTTCGTTGAAGATGTTTTTCAGTACCAAGAGCTTCTTAATTCTTTTCCTATCAGGATGCAAAATGCTTAG 1200 0.4667 MEEAMRRLNGVVPILGPDPKESTVGENPKRSTAVNKRTLREDGSGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPQPSSAIPEHFFHSFNNNNFTKNSPSPPFNNHRSRHSTGSATCFDHPSAVDFSFSNPRNPSSSLNMLLLRDLINSSSNSPLLSSSTHNFHDQFYNKGASTFSTLPTVSSSSSSPPLIPSYSVNYPFEGSSSVNVNTLCGNNFSEKGVDDCGSGFFSRESSDSGLLEEIVNKFLPKTKPNKCERLPKMESYRNPQEAVLPSLISESTLVSTAQCYDEMTKGCQNNESFGNSFDHQGFSMQKFDSFNGFDSVQGMAMGNGQTMTNHAENCFVEDVFQYQELLNSFPIRMQNA* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01629 399 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Lapu2g01629 399 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Lapu2g01629 399 FunFam Ethylene-responsive transcription factor 2 47 106 - -
Lapu2g01629 399 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Lapu2g01629 399 MobiDBLite consensus disorder prediction 1 33 - -
Lapu2g01629 399 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Lapu2g01629 399 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Lapu2g01629 399 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 33 224 - -
Lapu2g01629 399 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Lapu2g01629 399 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Lapu2g01629 399 CDD AP2 48 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01629 Lapu-Chr2 29929242 29930441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01629 47 381 AP2-EREBP Transcription Factor Family AT1G24590 36.842 3.95e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu2g01629 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01629 - - vum:124821082 624.009