Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01623 ATGCCTCTTCTACTCGCTCGCACCCCACCCTCTTCACTTCCTCCAATCCCTCACCATCACTACAACAACAACAGCAACCTTCTAATCGTACCCTCTCAGAAGCGCTTCCCTCTCACTGCAGGGCCAATTGTTCTCTTTGCACCCCGCCGCATTCTAGCACCACCGCCGTTGAAGTGCGCCTCCATCAACGGAGTCTCCGTTCATAACAATCCAGAAGCTTCCAGAGAACAAGTCTACGCCGGCGAGTTACTTGAGAGGCTTCGTAAATGGCTCGGCTTTTTACCGTCGATTCTTCCCGGCGGACGGTGGTGGGACTTCTCCGAGGACGTCGACGTTCAGCTGGTGACGCAGCCGGTGACCGTGTGGCGCGCACTAGGCAAAATGTGGGAGCTTGTCGCGCGTGACAGATGGGTTATCTTCGCTGCTTTCTCTGCTCTCATTGTTGCTGCAGTTTCGGAGATTTCCATTCCGCATTTCTTGACGGCGTCCATATTCTCGGCGCAGGGTGCGGATCTTCCTGTTTTTCATCGGAATGTGCGCGTGTTGGTTCTGTTGTGCGTGACTTCGGGAATATGCAGTGGGATACGGGGTTGCTGTTTTGGCATTGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACACTATACTCTTCTCTTCTTCTGCAGGATATATCGTTTTTTGACAATGAAACGGTAGGTGATTTGACAAGTAGGCTTGGGGCGGATTGTCAACAAGTCTCAAGGGTTATTGGAAATGATCTTAACTTGATATTGCGCAATGTCCTTCAGGGGGGAGGTTCATTAATCTATTTGTTGATTTTGTCTTGGCCACTTGGTTTATGTACATTGGTGATATGCTCCATATTAGCAGCAGTTATGTTACGCTATGGAAGGTACCAGAAAAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCGGCAAATGATGTAGCTCAAGAGACATTTTCTCTTATTAGAACTGTACGAGTTTATGGAACAGAAGAAGAAGAATATGGGAGGTATAAATGGTGGCTAGGGAAATTAGCTGACATCAGCTTACGACAAAGTGCTGCTTATGGAGTTTGGAATTTTAACTTTAACATCCTTTACCATTCAACTCAGGTTATTGCTGTGCTATTTGGAGGAATGTCTATTCTAGCGGGTCATATCACAGCTGAGAAACTTACCAAGTTTATTCTATACAGTGAATGGTTAATCTACTCTACCTGGTGGGTGGGAGACAATATATCCAATTTGATGCAATCAGTTGGGGCTAGTGAAAAAGTATTCCATTTAATGGATCTTTCCCCTAGCAGCCAATTCATAGAAAGAGGTATGAAGTTGCAGAGGTTAACAGGGCGTATTGAGTTTCTAAATGTATCTTTTCACTATCCTTCAAGGCCAACGGTATCTGTAGTGCAACATGTAAGCTTTGCTGTCCATCCTGGTGAGGTGGTTGCAATAGTTGGGCTTAGTGGTAGTGGAAAAAGTACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTACAAATGGTCAGATTTTGATAGATGATATCCCTATTAAAGACTTGGACATCATGTGGTGGAGAGAGAGAATTGGATTCGTGGGCCAGGAACCCAAACTCTTCCGGATGGATATTAGTTCAAACATCAGATATGGATGTAGAGATGTAAAACAGGAGGATGTTGAATGGGCTGCAAAGCAAGCCTATGCCCACGACTTTATCTCAGCACTTCCCAATGGCTATGAGACACTTGTTGATGACGATCTGTTAAGTGGAGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCCTTCTTAGGGACCCAAAAATATTGATCCTTGATGAAGCCACTAGTGCACTAGATGCTGAAAGTGAGCATAATGTCAAGGGTGTTCTTCGATCTGTGAGAAGTGATTCTGCAACCAGAAGTGTCATAGTCATTGCGCACAGGCTTTCTACCATACAAGCAGCTGACAGGATTGTGGTGATGGATGGTGGTCACATTGTTGAGATTGGAAGTCACAGGGAACTTCTCTTAAAAGATGGTTTGTATGCACGGTTAACTAGGAAACAGGCTGATGCCATGACATGA 2097 0.453 MPLLLARTPPSSLPPIPHHHYNNNSNLLIVPSQKRFPLTAGPIVLFAPRRILAPPPLKCASINGVSVHNNPEASREQVYAGELLERLRKWLGFLPSILPGGRWWDFSEDVDVQLVTQPVTVWRALGKMWELVARDRWVIFAAFSALIVAAVSEISIPHFLTASIFSAQGADLPVFHRNVRVLVLLCVTSGICSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGGGSLIYLLILSWPLGLCTLVICSILAAVMLRYGRYQKKAARLIQEVTASANDVAQETFSLIRTVRVYGTEEEEYGRYKWWLGKLADISLRQSAAYGVWNFNFNILYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFHLMDLSPSSQFIERGMKLQRLTGRIEFLNVSFHYPSRPTVSVVQHVSFAVHPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILIDDIPIKDLDIMWWRERIGFVGQEPKLFRMDISSNIRYGCRDVKQEDVEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARALLRDPKILILDEATSALDAESEHNVKGVLRSVRSDSATRSVIVIAHRLSTIQAADRIVVMDGGHIVEIGSHRELLLKDGLYARLTRKQADAMT* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01623 698 PANTHER ABC TRANSPORTER B FAMILY 134 690 IPR039421 -
Lapu2g01623 698 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 455 692 IPR003439 GO:0005524
Lapu2g01623 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 693 IPR027417 -
Lapu2g01623 698 Gene3D ABC transporter type 1, transmembrane domain 122 440 IPR036640 GO:0005524|GO:0016020
Lapu2g01623 698 PIRSF ABC_prm/ATPase_B 73 698 - -
Lapu2g01623 698 ProSitePatterns ABC transporters family signature. 592 606 IPR017871 GO:0005524|GO:0016887
Lapu2g01623 698 CDD ABC_MTABC3_MDL1_MDL2 455 693 - -
Lapu2g01623 698 CDD ABC_6TM_TAP 142 429 - -
Lapu2g01623 698 Gene3D - 445 697 IPR027417 -
Lapu2g01623 698 SMART AAA_5 482 669 IPR003593 GO:0016887
Lapu2g01623 698 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 140 421 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu2g01623 698 SUPERFAMILY ABC transporter transmembrane region 127 437 IPR036640 GO:0005524|GO:0016020
Lapu2g01623 698 FunFam ABC transporter B family member 26, chloroplastic 121 440 - -
Lapu2g01623 698 FunFam Multidrug ABC transporter ATP-binding protein 447 697 - -
Lapu2g01623 698 Pfam ABC transporter transmembrane region 140 406 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu2g01623 698 Pfam ABC transporter 474 620 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01623 Lapu-Chr2 29860118 29867682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01623 210 696 Calmodulin-binding Proteins AT2G36910 34.274 9.36e-74 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01623 - - vra:106777591 1273.46