LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu2g01607	ATGCCCCTTGCATCGTTTCTGCTTATCTTCCTTTGTTGTCGTGCTTTTCCTGCACTAGCTGATCCAAGAGCCACAGAGGTCGCAGTGATGTGCACCAACACAACAGCCCCAATGCTTAAACGACAAGCTTTCTTAACAAACTTCTATGATGCCATAGAAGCCTTAACCGATTTGATTACAAGCCAAAGATATGCGCTTGTGGTTAAAGGGACTACTCCAAATGAAACTGTCTATGCTTTTGGCCAGTGCATGAAAGATCTTTCCAAACCAGATTGTGATGTCTGCTTTGCACAATGCAAGACACGTGTCCATAGGTGCTCTCCGTTTCAGAGAGGCACTAGAGGGGGCATGTTTTTCTTTGATGGATGCTACCTTAGGTATGATGGCTACAACTTCTTCAATGAGAGTCTCAGTCCTCGGGACAGGACTGTTTGTGGAACCGAAGATTTTAGAGGGAATTGGAGTGTGTTTAAGGCCAATACTGTGGAATTGGTGAGAAATTTGAGCATTGAAGCAACAAAGAATGAAGGGTTCTCTGTGGGGTATGTGAGAAGAGGTAATGTGACTATTTATGGGTTGGCTCAATGCTGGAAGTTTGTGAATGGCAGTTCCTGTCAGAACTGTTTGGCTGAAGCTATCTCTAGGATTGGTTCATGTGCTCCAAAAGAAGAAGTGAAGACATTGAATGCAGGGTGTTACTTGAGGTATGCTACACACAATTTCTATAATAGTTCAAACAACAATGCCCCTCAAGAACATCGAGGACACAAAAATTTTGCTATCATAGTGGCTGCGTCATCTGCTTCCATGGCTTTCCTGCTGATTGTTGCAACTGGGATTTTCCTTGTGTGGACAAATTTACTAAAGCGGAGGAGAGAAAAAAGACAAGTTGGTGTACTTTTGAACACAGTGATCAAGTCCAAACTACATGTGCCGTATGAAATTCTTGAAAAAGCCACAGATTATTTCAGTGATTCCAATAAGCTAGGAGAAGGGGGATCAGGATCAGTTTATAAGGGAGCTCTGCCAGATGGAACTATCGTGGCTGTAAAAAGACTTACTTTTAACACATCACAATGGGCAGATCATTTTTTTAATGAGGTCAATTTGATCAGTGGCATTCGTCACAATAATCTAGTGAAGCTTTTAGGGTGCAGCATTACAGGACCAGAAAGCCTTCTTGTTTATGAATTTGTGCCCAATCATAGCCTCCATTATCACCTATCTGGAAGAAGGAATTCTGTACAGTTGACATGGGAAGTCAGGCACAAAATCATATTGGGAACAGCAGAGGGTTTGGCCTATCTTCATGAAGAATCACAGAGAATCATTCACAGAGATATAAAATTAGGCAACATTCTCGTTGATGATAACTTCACACCCAAGATTGCTGATTTTGGACTTGTCAGATTATTTCCAGAAGACAAGTCTCACCTTAGCACAGCCATTTGTGGCACACTGGGCTATATGGCTCCAGAATATGTAGTTCTAGGGAAGCTAACTGAGAAAGCGGATGTCTACAGTTTTGGAGTGCTAATTATGGAAATTATATCTGGCAAAACGAGTAAATCCTTGGTTCAAAATTCATATTCTATCCTACACAGGCCTTTATGGATCAAACAAGCTATGTGA	1632	0.4167	MPLASFLLIFLCCRAFPALADPRATEVAVMCTNTTAPMLKRQAFLTNFYDAIEALTDLITSQRYALVVKGTTPNETVYAFGQCMKDLSKPDCDVCFAQCKTRVHRCSPFQRGTRGGMFFFDGCYLRYDGYNFFNESLSPRDRTVCGTEDFRGNWSVFKANTVELVRNLSIEATKNEGFSVGYVRRGNVTIYGLAQCWKFVNGSSCQNCLAEAISRIGSCAPKEEVKTLNAGCYLRYATHNFYNSSNNNAPQEHRGHKNFAIIVAASSASMAFLLIVATGIFLVWTNLLKRRREKRQVGVLLNTVIKSKLHVPYEILEKATDYFSDSNKLGEGGSGSVYKGALPDGTIVAVKRLTFNTSQWADHFFNEVNLISGIRHNNLVKLLGCSITGPESLLVYEFVPNHSLHYHLSGRRNSVQLTWEVRHKIILGTAEGLAYLHEESQRIIHRDIKLGNILVDDNFTPKIADFGLVRLFPEDKSHLSTAICGTLGYMAPEYVVLGKLTEKADVYSFGVLIMEIISGKTSKSLVQNSYSILHRPLWIKQAM*	544

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu2g01607	543	Gene3D	Phosphorylase Kinase; domain 1	284	398	-	-
	Lapu2g01607	543	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	78	538	-	-
	Lapu2g01607	543	SMART	serkin_6	323	538	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu2g01607	543	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	443	455	IPR008271	GO:0004672\|GO:0006468
	Lapu2g01607	543	ProSiteProfiles	Protein kinase domain profile.	323	543	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu2g01607	543	Pfam	Salt stress response/antifungal	39	128	IPR002902	-
	Lapu2g01607	543	Pfam	Salt stress response/antifungal	149	238	IPR002902	-
	Lapu2g01607	543	ProSiteProfiles	Gnk2-homologous domain profile.	138	241	IPR002902	-
	Lapu2g01607	543	FunFam	Cysteine-rich receptor-like protein kinase 3	141	241	-	-
	Lapu2g01607	543	SUPERFAMILY	Protein kinase-like (PK-like)	305	524	IPR011009	-
	Lapu2g01607	543	Pfam	Protein kinase domain	324	522	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu2g01607	543	FunFam	Os07g0541700 protein	399	486	-	-
	Lapu2g01607	543	ProSitePatterns	Protein kinases ATP-binding region signature.	329	351	IPR017441	GO:0005524
	Lapu2g01607	543	Gene3D	Transferase(Phosphotransferase) domain 1	399	538	-	-
	Lapu2g01607	543	FunFam	Cysteine-rich receptor-like protein kinase 2	289	398	-	-
	Lapu2g01607	543	Gene3D	-	24	132	IPR038408	-
	Lapu2g01607	543	Gene3D	-	141	241	IPR038408	-
	Lapu2g01607	543	ProSiteProfiles	Gnk2-homologous domain profile.	25	132	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu2g01607	Lapu-Chr2	29654793	29657904	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu2g01607	17	487	Receptor kinase-like Gene Family	AT1G70530	58.140	0.0	570

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lapu2g01607		Pkinase	8.5e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu2g01607	-		-	pvu:PHAVU_002G063600g	1021.54