Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01604 ATGGATCAAATGTACGGAGTGCCGGACTACGCCGACAAGCCCCTCATGACTCCGGAGAATCTGATTTTCCCTCCAGACTACCCCGCCTTCCTCACCGCCGCCCGGATTCCCATCTTCGGATCCGACGACCTCTTCTCGGGCGAGCCCTCCGCTGCCTCCGCCTCTCCAGCTGGAATTCCCCGCCACCAGGACGATGACGCCGCTACCACCGTCATGAAGGCCAAAATCGCCTCCCACCCTCACTACCCTCGCCTCCTCCAAGCTTACATCGATTGCCAGAAGGTTGGGGCGCCTCCGGAAATCGCGCGTCTGTTGGAGGAAATCCGGCGAGAAAACGACCTGTGCAAGAGCGACGTTGTTTCCACGTGCTTTGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACCTACTGCGACATGCTCGTCAAGTATAAATCCGACTTGGCTCGCCCTTTCGACGAAGCAACCACTTTCCTCAACAAGATCGAAATGCAGCTCAGCCATCTCTGCACTGGCGCTTCTGTTTCCACCGTTTCTGATGATGGGGGTGTGTCTTCAGACGAAGATTTGAGTACAGGAGATGGTGATGGTCAAGATGGCCAATCAAAGGGTGAAGATCGTGAACTCAAGGATAGACTTTTACGTAAGTTTGGGAGTCACATCGGTACTTTGAAACTGGAGTTTTCAAAAAAGAAAAAGAAAGGTAAGCTTCCGAAGGAAGCAAGACAAACATTGCTTCAGTGGTGGAATGTTCACTTCAAATGGCCTTACCCTACGGAAGCTGATAAGATTGAACTGGCCAAGTCAACAGGGCTAGATCAGAAGCAAATTAACAATTGGTTTATTAACCAAAGAAAACGTCACTGGAAACCATCCGAGAATATGCAGTTTTCCATGATGGAAAATCTTAACGGACGGTTCCTTGCTGATGAATGA 936 0.5096 MDQMYGVPDYADKPLMTPENLIFPPDYPAFLTAARIPIFGSDDLFSGEPSAASASPAGIPRHQDDDAATTVMKAKIASHPHYPRLLQAYIDCQKVGAPPEIARLLEEIRRENDLCKSDVVSTCFGADPELDEFMETYCDMLVKYKSDLARPFDEATTFLNKIEMQLSHLCTGASVSTVSDDGGVSSDEDLSTGDGDGQDGQSKGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHFKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLNGRFLADE* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01604 311 ProSiteProfiles ELK domain profile. 208 228 IPR005539 GO:0003677
Lapu2g01604 311 SMART KNOX2_2 120 171 IPR005541 GO:0003677|GO:0005634
Lapu2g01604 311 MobiDBLite consensus disorder prediction 179 208 - -
Lapu2g01604 311 Pfam KNOX2 domain 124 170 IPR005541 GO:0003677|GO:0005634
Lapu2g01604 311 Pfam Homeobox KN domain 248 287 IPR008422 GO:0003677|GO:0006355
Lapu2g01604 311 Pfam ELK domain 208 229 IPR005539 GO:0003677
Lapu2g01604 311 SUPERFAMILY Homeodomain-like 229 300 IPR009057 -
Lapu2g01604 311 SMART ELK_2 208 229 IPR005539 GO:0003677
Lapu2g01604 311 CDD homeodomain 240 292 IPR001356 GO:0003677
Lapu2g01604 311 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 72 298 - -
Lapu2g01604 311 Gene3D - 227 301 - -
Lapu2g01604 311 ProSitePatterns 'Homeobox' domain signature. 266 289 IPR017970 GO:0000981|GO:0006355
Lapu2g01604 311 ProSiteProfiles 'Homeobox' domain profile. 228 291 IPR001356 GO:0003677
Lapu2g01604 311 SMART HOX_1 230 295 IPR001356 GO:0003677
Lapu2g01604 311 Pfam KNOX1 domain 72 113 IPR005540 GO:0003677|GO:0005634
Lapu2g01604 311 SMART KNOX1_2 70 114 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01604 Lapu-Chr2 29618232 29626845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01604 1 311 Homeobox Transcription Factor Family AT1G23380 67.173 1.10e-146 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lapu2g01604 KNOX2 3.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01604 - - gmx:100794719 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01604 2 29618232 29626845 Lapu2g01604 2 29618232 29626845 ECH