Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01597 ATGCAGATATTCGTGAAAACCCTAACGGGGAAAACCATCACCCTTGAGGTGGAGTCTTCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGTCTCCGCGGTGGCATGCAGATATTCGTGAAAACCCTAACGGGGAAGACCATCACCCTTGAGGTGGAATCTTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTCGCCGACTACAATATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGTCTCCGTGGTGGTGCCAAGAAGCGCAAGAAGAAGACCTACACTAAGCCAAAGAAGATCAAGCACAAGCACAAGAAGGTGAAGCTCGCTATCCTCCAATTTTACAAAGTTGACGACTCCGGCAAGGTGCAGAGGCTCCGCAAGGAGTGCCCTAACGCGGAGTGCGGCGCCGGAACTTTCATGGCTAACCACTTCGATCGCCACTACTGCGGCAAGTGCGGCCTTACTTATGTCTATCAGAAGGCCAGCGCCTAA 696 0.5575 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAILQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKASA* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01597 231 PRINTS Ubiquitin signature 11 31 IPR019956 -
Lapu2g01597 231 PRINTS Ubiquitin signature 53 74 IPR019956 -
Lapu2g01597 231 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lapu2g01597 231 FunFam Ubiquitin-40S ribosomal protein S27a 77 155 - -
Lapu2g01597 231 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Lapu2g01597 231 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Lapu2g01597 231 PANTHER UBIQUITIN 77 165 - -
Lapu2g01597 231 FunFam Polyubiquitin 3 1 76 - -
Lapu2g01597 231 SUPERFAMILY Zn-binding ribosomal proteins 176 229 IPR011332 GO:0006412
Lapu2g01597 231 CDD Ubl_ubiquitin 1 76 - -
Lapu2g01597 231 SUPERFAMILY Ubiquitin-like 77 169 IPR029071 -
Lapu2g01597 231 SMART Ribosomal_S27_2 178 223 IPR002906 GO:0003735|GO:0005840|GO:0006412
Lapu2g01597 231 Gene3D - 1 77 - -
Lapu2g01597 231 CDD Ubl_ubiquitin 77 152 - -
Lapu2g01597 231 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Lapu2g01597 231 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Lapu2g01597 231 Gene3D - 78 156 - -
Lapu2g01597 231 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Lapu2g01597 231 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Lapu2g01597 231 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Lapu2g01597 231 Gene3D - 157 230 IPR038582 -
Lapu2g01597 231 SMART ubq_7 1 72 IPR000626 GO:0005515
Lapu2g01597 231 SMART ubq_7 77 148 IPR000626 GO:0005515
Lapu2g01597 231 Pfam Ribosomal protein S27a 178 223 IPR002906 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01597 Lapu-Chr2 29510502 29516601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01597 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 100.000 1.59e-48 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01597 K08770 - epa:110252685 366.696