Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01596 ATGTCAACACTGAACCATCTTTTTGATCTTCCTGAACAGATATGTTACGTACAATGTGGATTCTGTACCACCATATTAATGGTAAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGTGGGCACTGCACAAGCCTCCTTTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAACAAGATGCTAACAAGACTTTGAATAGCCACAGTGCATCCCTGATGACCTATTCTGATTGTGAGGAAGAGGATATCATTCCAATGAGTAATATTGTGAATAAGCGTACCTCCAGAGAAGAGACAGCGAACGCCATCAGCTTATAA 381 0.4121 MSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLSHLEPKESSPEQDANKTLNSHSASLMTYSDCEEEDIIPMSNIVNKRTSREETANAISL* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01596 126 PANTHER PROTEIN YABBY 6-RELATED 2 114 IPR006780 GO:0007275
Lapu2g01596 126 Pfam YABBY protein 11 101 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01596 Lapu-Chr2 29504365 29506445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01596 2 121 C2C2-YABBY Transcription Factor Family AT1G23420 57.692 4.43e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lapu2g01596 YABBY 3.7e-27 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01596 K25796 - gmx:100804172 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01596 2 29504365 29506445 Lapu2g01596 2 29504365 29506445 ECH