LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu2g01587	ATGGCTAATCAATCCTTGTCAAATGGGTCGTCTACACCGGGTCCCGTTAACGCTCCGTCACCGTCCTCGTCGCAGCCGTCATCGGACGACGCAGACCCTCCGCCACCCTCGAAATCGCCGCCTTCAACGTCAACGCCGTTATCATCACCACCATCACCGTCAACGTCACCACCACCCCCAGAAAACTCTTCTTCTCCGCCGACAATTCCTCCTCCGGAGCCGGAAAAATCTCCTCCGCCGGTACCGGGAAAATCGCCTGGGCCACCAACTCCGTCTCATTCTCCGCCGCCAACTCCTTCTGCTTCTCCACCACCTCCCCCTTCGACGTCGCCACCATCGCCTGTTCAATCTTCTCCCCCGCCAACAGATTCTCCACCGTCTCCACCACCTCCGTCAACTCCCCCGCCATCAAAAGGTTCATCTCCACCACCTTCTATGTCGCCGCCGCCGCCACGTTCACAACCGTCACCATCATGGCCTCCTCCAAAAAGTACACCTCCATCACCACAATCTTACGCTCCTCCTCCACATTCCCTTTCGCCTCCAACAGCAACTGCAACTCCACCATCACTGGCTTCTAGTATTAATTCACCGCCGTACCCGCACACAGCTTCAGCGTCAAATCCCCCTTCACCACTGCGATCAACACCAGGATTATCACCGGGATTATTACCAGGATTACCTCCGATTTCCCAACCAAAACAAATGGCTACTCCCCGGAAGAGCAACCCTCCGACGGGTAATAGTAATACAGGACAAATTGTTGGTCTTGCACTCGCCGGGGTTTTCCTCATTGCATTTCTTGCTCTAGTTATTTTCTTTATATTCAGGCATAGGACTAAGCGAGTGAACATCTATGCTGCGCCACCCCCTAGGAAATCTCATATGAAAGGAGCAGTGGCAGCAGGAGAGCAGCCTGGTTTTGGGGGTGGTGCACAACAAGGTGCCATGCCTATACAATCTCCTTCAGATCCGACTCTGACCACTGGTCAGTTAATTTTTACCTTCGAAAAGGTTGCGGAGATCACTAACGGTTTTTCCAGCGAAAACATAATAGGGGAAGGGGGATTTGGGTATGTTTACAAGGCTTCCATGCCTGATGGTAGAGTGGGGGCGCTTAAGATGTTGAAGGCTGGTAGTGGGCAGGGAGAAAGGGAGTTCAGGTCTGAGGTTGACATTATCAGCAGAATCCATCATCGACATTTGGTTTCACTAATTGGTTATTGCATATCAGAACAGCAAAGAGTGCTTATCTATGAGTTCGTTCCTAATGGAAATCTAAATCAGCACTTGCATGGAAGTGAATGGCCAATTTTGGATTGGTCCAAGAGGATGAGGATAGCAATTGGTGCTGCAAGGGGACTGTCATATCTTCACGATGGATGTAACCCAAAGATTATTCACAGAGATATTAAATCTGCTAACATTCTTTTGGATAATGCTTACGAGGCACAGGTTGCTGACTTTGGACTTGCAAGGCTAACTGACGATGCTAATACCCATGTATCAACTAGGGTGATGGGGACCTTTGGGTACATGGCTCCAGAGTATGCAACAAGTGGAAAATTAACGGATAGATCAGATGTTTTCTCTTTTGGAGTTGTCCTTCTTGAGCTTATAACTGGAAGGAAACCTGTTGATCCAACGCAGCCCTTAGGAGAGGAGAGTTTGGTTGAGTGGGCTCGTCCACTTCTCCTTCGTGCAGTTGAGACAGGAGACTTTGGTGAGCTAGTAGACCCTAGGCTTGAACAACAATACATTGACAATGAAATGTTCAAAATGATTGAGGCAGCAGCAGCATGTGTGCGCCATTCTGCTCCAAAACGACCTCGTATGGTTCAGGTGATAAGAGCCTTAGACAACGGTGATAAACTATACGATCTATCAAATGGGGTGAGATATGGGCAGAGCACTGTTTATGATTCTGGTCAGTTTAATGAAGACATTACAAGATTCAGAAAGATGGTTAATGGAAGCTTTGATGATTCTGAGTTTGATAAGTACAGCTCGGAATTCCGTTCAACTGTTTCAAGAGAAATGAATGAAACCAACCATGCAAGGGAATCACATAGTGCAGCAACTGGTGATTCAGAATTTAAATTTTTCCACAACCAAAGGAGCAATACCCAGAACATGTCTTAA	2142	0.4809	MANQSLSNGSSTPGPVNAPSPSSSQPSSDDADPPPPSKSPPSTSTPLSSPPSPSTSPPPPENSSSPPTIPPPEPEKSPPPVPGKSPGPPTPSHSPPPTPSASPPPPPSTSPPSPVQSSPPPTDSPPSPPPPSTPPPSKGSSPPPSMSPPPPRSQPSPSWPPPKSTPPSPQSYAPPPHSLSPPTATATPPSLASSINSPPYPHTASASNPPSPLRSTPGLSPGLLPGLPPISQPKQMATPRKSNPPTGNSNTGQIVGLALAGVFLIAFLALVIFFIFRHRTKRVNIYAAPPPRKSHMKGAVAAGEQPGFGGGAQQGAMPIQSPSDPTLTTGQLIFTFEKVAEITNGFSSENIIGEGGFGYVYKASMPDGRVGALKMLKAGSGQGEREFRSEVDIISRIHHRHLVSLIGYCISEQQRVLIYEFVPNGNLNQHLHGSEWPILDWSKRMRIAIGAARGLSYLHDGCNPKIIHRDIKSANILLDNAYEAQVADFGLARLTDDANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGEESLVEWARPLLLRAVETGDFGELVDPRLEQQYIDNEMFKMIEAAAACVRHSAPKRPRMVQVIRALDNGDKLYDLSNGVRYGQSTVYDSGQFNEDITRFRKMVNGSFDDSEFDKYSSEFRSTVSREMNETNHARESHSAATGDSEFKFFHNQRSNTQNMS*	714

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu2g01587	713	SMART	serkin_6	346	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu2g01587	713	Pfam	Protein tyrosine and serine/threonine kinase	349	618	IPR001245	GO:0004672\|GO:0006468
	Lapu2g01587	713	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	263	673	IPR047117	-
	Lapu2g01587	713	MobiDBLite	consensus disorder prediction	235	249	-	-
	Lapu2g01587	713	MobiDBLite	consensus disorder prediction	1	249	-	-
	Lapu2g01587	713	MobiDBLite	consensus disorder prediction	184	213	-	-
	Lapu2g01587	713	FunFam	proline-rich receptor-like protein kinase PERK8	422	634	-	-
	Lapu2g01587	713	ProSiteProfiles	Protein kinase domain profile.	346	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu2g01587	713	PRINTS	Proline rich extensin signature	35	51	-	-
	Lapu2g01587	713	PRINTS	Proline rich extensin signature	14	35	-	-
	Lapu2g01587	713	PRINTS	Proline rich extensin signature	54	71	-	-
	Lapu2g01587	713	PRINTS	Proline rich extensin signature	79	104	-	-
	Lapu2g01587	713	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	321	421	-	-
	Lapu2g01587	713	SUPERFAMILY	Protein kinase-like (PK-like)	322	619	IPR011009	-
	Lapu2g01587	713	Gene3D	Phosphorylase Kinase; domain 1	316	421	-	-
	Lapu2g01587	713	MobiDBLite	consensus disorder prediction	28	183	-	-
	Lapu2g01587	713	MobiDBLite	consensus disorder prediction	1	27	-	-
	Lapu2g01587	713	Gene3D	Transferase(Phosphotransferase) domain 1	422	631	-	-
	Lapu2g01587	713	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	466	478	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu2g01587	Lapu-Chr2	29428063	29431938	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu2g01587	140	679	Trihelix Transcription Factor Family	AT1G70460	50.175	0.0	533

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Lapu2g01587		PK_Tyr_Ser-Thr	8.7e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu2g01587	-		-	pvu:PHAVU_002G070900g	794.267