Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01577 ATGATCAGAAACACAAGCGGGTCGGGACGCCGGATACTAACTTTCCCGGCGGTTCATCCATGCGAAAGCATCGCTCCCTCTACCCTTCTCCTTTCACTCATTACTCTCTGCAACGCTATTTCCTCTTTCCAACACAGGTTTTCGTGTTTCCCTTGCAACAAGCGAAACGCGAGAAAGGCGATTCGTTTAACCCTGCTCCTCCAACCTTTCCTTCATGAAATCCGAGACTGTCATTCGGGTCTTCCTGATCCAGCAACCCTGAGCCTCTCCGAGCTCCATTTAACCTTCCAGAAGCTTCTTTTCCTTCTTGAAGATCTCGCCCGTGAAGGAGCCAAGCTTTTCATGTTGATGGAATCGGATCGGGTTGCCACTCAATTTCGGGTCATATCGAGATCCGTGGCCACTGCTTTGGACGTTTTCCCTTTCGGTTCCGTGGAGATCTCTGAGGAAACCCAAGAGCATGTTTTGATGCTGAATGAACAAGCAAGGAAGGCCAGGTTTGAATTTGAGGAAGAAGATAAACGGGTTGTGATGAGTGTTGTGTCGGGTTTGACCCGGTTTGAGAACCAGGTTGCTCCGGATGAGGGTGATCTGAAGTGGCTCATTGAGTATGTCGGGGTTAAAGGGTGGAGTGAGTGTAACAAAGAGGTGAAGTTTTTGGAGGGAGAAATTGGGTTTAAGGGCTTAGATGAGAAGAGGAATAAGGTGACACTTTTGAATAGTTTGGTGGGGTTCATGAGTTATTGTAGATGCCTTGTGATGGAGGTTGTTGACTGTGAAGAGAGTCACAAAAAAATTGATGGAAGAGAAAGTAGTGCTGAAAGTGAGATGGATTTGAGTTTGAGTTGTCTTAACCCTGATGATTTTCGATGTCCAATCTCTTTGGAATTGATGAGTGATCCAGTGACAATAGAGACCGGTCATACATATGATCGTTCTTCAATTCTGAAGTGGTTCAGAAGTGGGAATTTCACGTGTCCCAACACCGCTAAAAAGCTTATCACCACTGAAATGGTTCCAAACTTGGTGCTTCGGAAGTTGATTCAGCGATATTGCTATGCGAATGACATAAGCATTCCCTTTGTTGATTTGGGTCGTAGGAATCGTGAGGTTACTAGGAGAGTGGAACCTGGGAGTGTAGCAGCAGAGGGAGCAATGAGAATGTTGGCTAGTTTTCTGAAAGGCAGGATTGAGAATGGAAATGGGGAAGAGATTAATAGAGGTGCATTTGAGACAAGGCTTCTTTCCAAGACAAGCGTTTTTAATAGGTCTTGTTTGGTGGAAGCTGGTTTGGTTCCTCTGTTGTTGAGGTTGTTGTCATCGAGGGATTCGTTGACTCAAGAGAACGCTGCTGCAGCTCTTCTAAACCTCTCAAAATGTGCAAAGAGTAGAAGTGTGATGGTTGAGAAATGGGGGTTGGGACTGATTGTTGGGGTGTTAAAGAAGGGTGTGAAGATTGAAGCTCGCCAGCATATTGCTGCTGTGTTGTTTTACCTAAGCTCCGAGTACGGGAACTTGATAGGGAAGGAGCCAGAAGCAATTCCATCATTGATAAGGCTTGTCAAAGATGAGCCTTATCGAAGCAAGAAAAATGGGTTGGTTGCAATTTTTGGCCTTCTTAAGCACCCTGAAAATCATAGGAGGGTGGTCGAAGGTGGAGCAGTTCCTTTGCTAGTTGGCATCTTGAAAGGATCTGAAAAGGAAGACCTTATCACAGATTCGCTGGCAGTTCTAGCAACTCTGGCAGAGAAGAGCGAGGGAATGTATGCAATTCTTCACGGAGAGGCTTTGCGTGTAGCTGTTGAAATTTTGAGTTGTTCCACTTCGAGGGTGGGAAGGGAGCACTGCGTGGCTTTATTGCTTTCTTTGTCTCTAAATGGTGGAGAGGATGTGGTTGCTTATTTAGTGAAGAGTCCTTCTCTTATGGGATCCTTGTATTCCCAACTCAGCCAAGGCACATCTCGAGCAAGCAAGAAAGCCAGTGCTCTCATTAGGGTCCTCCATGATTTTTATGAAAGGAGGTCCTCTGGTTTTAAGATTTCAGTTATTCCACAAGAACAGTTCATTCACGTTCGGTAA 2079 0.4555 MIRNTSGSGRRILTFPAVHPCESIAPSTLLLSLITLCNAISSFQHRFSCFPCNKRNARKAIRLTLLLQPFLHEIRDCHSGLPDPATLSLSELHLTFQKLLFLLEDLAREGAKLFMLMESDRVATQFRVISRSVATALDVFPFGSVEISEETQEHVLMLNEQARKARFEFEEEDKRVVMSVVSGLTRFENQVAPDEGDLKWLIEYVGVKGWSECNKEVKFLEGEIGFKGLDEKRNKVTLLNSLVGFMSYCRCLVMEVVDCEESHKKIDGRESSAESEMDLSLSCLNPDDFRCPISLELMSDPVTIETGHTYDRSSILKWFRSGNFTCPNTAKKLITTEMVPNLVLRKLIQRYCYANDISIPFVDLGRRNREVTRRVEPGSVAAEGAMRMLASFLKGRIENGNGEEINRGAFETRLLSKTSVFNRSCLVEAGLVPLLLRLLSSRDSLTQENAAAALLNLSKCAKSRSVMVEKWGLGLIVGVLKKGVKIEARQHIAAVLFYLSSEYGNLIGKEPEAIPSLIRLVKDEPYRSKKNGLVAIFGLLKHPENHRRVVEGGAVPLLVGILKGSEKEDLITDSLAVLATLAEKSEGMYAILHGEALRVAVEILSCSTSRVGREHCVALLLSLSLNGGEDVVAYLVKSPSLMGSLYSQLSQGTSRASKKASALIRVLHDFYERRSSGFKISVIPQEQFIHVR* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01577 692 FunFam RING-type E3 ubiquitin transferase 285 357 - -
Lapu2g01577 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 430 472 IPR000225 GO:0005515
Lapu2g01577 692 SUPERFAMILY RING/U-box 286 357 - -
Lapu2g01577 692 SMART Ubox_2 288 351 IPR003613 GO:0004842|GO:0016567
Lapu2g01577 692 SMART arm_5 460 501 IPR000225 GO:0005515
Lapu2g01577 692 SMART arm_5 542 583 IPR000225 GO:0005515
Lapu2g01577 692 SMART arm_5 419 459 IPR000225 GO:0005515
Lapu2g01577 692 Pfam U-box domain 286 355 IPR003613 GO:0004842|GO:0016567
Lapu2g01577 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 553 596 IPR000225 GO:0005515
Lapu2g01577 692 Gene3D - 370 674 IPR011989 -
Lapu2g01577 692 ProSiteProfiles U-box domain profile. 284 358 IPR003613 GO:0004842|GO:0016567
Lapu2g01577 692 FunFam RING-type E3 ubiquitin transferase 367 678 - -
Lapu2g01577 692 PANTHER U BOX DOMAIN-CONTAINING 56 667 - -
Lapu2g01577 692 Pfam Armadillo/beta-catenin-like repeat 422 458 IPR000225 GO:0005515
Lapu2g01577 692 CDD RING-Ubox_PUB 286 338 IPR045210 -
Lapu2g01577 692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 359 IPR013083 -
Lapu2g01577 692 SUPERFAMILY ARM repeat 384 667 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01577 Lapu-Chr2 29303609 29305745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01577 1 690 U-box Gene Family AT1G60190 44.176 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01577 - - vra:106779024 1178.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01577 2 29303609 29305745 Lapu2g01577 2 29303609 29305745 ECH