Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01570 ATGTGTAGGGTTCTTCACTCTCAAATTCTTCTCAGCAATGGTGCTATCACCAACCCGCCTATTCTTTCTCCATATTCTTCTTCTTCTTTACCCTCGGTGCCTTATGTTTCCAACTACCAGAAACAATCAGCTCCATCCCCATCTTCTTCATCTGGGAACAAAATAAGCCCTGCAATTCTTTTCATCATAGTCATTTTAGCTGTGGTGTTTTTCATCTTGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCACAGGTCTTCTAATTCATCAATTTCCCAATCAAATAGATACCCTGACATGTCCGAATCAGATGCTTACCAGAGACAGTTACAACAGCTCTTCCATCTTCACGATTCAGGCCTGGATCAGGCTTTCATAGATGCTCTCCCCGTCTTCTATTACAAAGAGATTATAGGCTTGAAAGAGCCATTTGATTGTGCTGTTTGCCTCTCTGAGTTCTTGGAACAAGACAAATTGAGATTGCTGCCCATGTGTAACCATGCTTTTCACATTGAATGCATAGATACATGGTTGTTGTCCAATTCAACATGCCCTCTCTGTAGAAGGACTCTGTATTCACCAGGCTTTGCCTTTGAGAACTCAGCTTTTGACTTTGAAAGTCAACTCGAGGAAGATGGGGTGTCCGGCAGTAGTGGAGTTGGAGTTGGTTCTTTTCACAAAACTGTAGAAAGTCACATAGTGAATGGGAAAAGGGTGTTTTCTGTTAGGCTTGGAAAATTTAGAAGTACTAATAATGGAGATGGGGTGGAGAGAGGTGAAGGTGAGAGCAGTAGTGGTAATTTTGATGTAAGGAGATGCTATTCAATGGGGTCTTTTCAGTATGTGGTGGCTGATTCAGATCTGAGAGTGGCTTTAGGCCCTCCTGGAGGTGATGGAGGGAGCAGTGGCAGCATGAGACAACTGAAGGGAAGAGCAGCCCCAAATGGAAGTTCTTTCATTGATGGGGATAGTGAGGGCAAGAAAATCAACCTTGCAAGGAAAGGTGAAAGCTTTTCCGTTTCCAAAATCTGGCAATGGTCTAGGAAAGATAAGTTGTCAGGTTCATCTGATGCTCACTTCCATAATTCTACTGTCACTGCAACTTTGCCATGGATGAATAAAGCCAGAGTGACAGAACTTGTAAATTCTGCCATAAACATAATCAGGCAATCATCTTTGAACAAGAATTAA 1197 0.4236 MCRVLHSQILLSNGAITNPPILSPYSSSSLPSVPYVSNYQKQSAPSPSSSSGNKISPAILFIIVILAVVFFILGLLHLLVRFLIKHRSSNSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFYYKEIIGLKEPFDCAVCLSEFLEQDKLRLLPMCNHAFHIECIDTWLLSNSTCPLCRRTLYSPGFAFENSAFDFESQLEEDGVSGSSGVGVGSFHKTVESHIVNGKRVFSVRLGKFRSTNNGDGVERGEGESSSGNFDVRRCYSMGSFQYVVADSDLRVALGPPGGDGGSSGSMRQLKGRAAPNGSSFIDGDSEGKKINLARKGESFSVSKIWQWSRKDKLSGSSDAHFHNSTVTATLPWMNKARVTELVNSAINIIRQSSLNKN* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01570 398 MobiDBLite consensus disorder prediction 297 322 - -
Lapu2g01570 398 SMART ring_2 148 189 IPR001841 -
Lapu2g01570 398 CDD RING-H2_EL5-like 147 190 - -
Lapu2g01570 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 195 IPR013083 -
Lapu2g01570 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 49 346 - -
Lapu2g01570 398 Pfam Ring finger domain 147 190 IPR001841 -
Lapu2g01570 398 FunFam RING-H2 finger protein ATL46 110 195 - -
Lapu2g01570 398 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Lapu2g01570 398 SUPERFAMILY RING/U-box 127 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01570 Lapu-Chr2 29182961 29185372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01570 49 358 C3H Transcription Factor Family AT2G18650 40.828 8.25e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01570 - - gmx:100805154 569.696