Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01541 ATGCCGGGGCACCGCTCGAAGTCGGAGAAGCATGACGGCGGTGAGAAGCAGCTCCGGCGGGATCCCTACGAGGTCCTTGGCGTCTCGCGCAACTCAACGGATCAGGAAATCAAAACTGCGTACCGCAAAATGGCACTCAAATATCATCCGGACAAGAATGCAAATGATCCTAAAGCAGCTGATATGTTTAAAGAGGTTACCTTTTCATATAATATCCTCTCAGATCCTGACAAAAGGCGTCAATACGACTCAGCTGGCTTTGAGGCTGTCGAATCTGACAACCAAGAGTTGGAGTTAGATCTTTCAAGTTTGGGAGCTGTCAATACAATGTTTGCTGCACTTTTTAGTAAACTTGGTGTGCCAATTAAGACAACTGTCTCTGCTTCTGTTTTGGAAGAGGCACTCAATGGTTTAGTGACCATTCGTCCACTTCCATTAGGACATTATATATCTAAAAGGGTTGAGAAGCAATGTGCACACTTCTATTCAGTTACAATAACAGAAGAGGAAGCACGAGCTGGATTTGTTTGTCGTGTACAGTCGTCAGACAAAAGCAAGTTTAAGTTATTATATTTTGATCAGGAAGACAATGGTGGTTTAAGTCTTGCTCTCCAGGAAGACAGTGCAAAAACAGGGAAGGCCACCTCTGCTGGGATGTATTTTCTTGGGTTTCCTGTTTATCGATTAGATCAAACAATGAACTCTGTAAGTGGCTACTGTAACAAGATAATAGCTGCTGCTAAGGATCCAGATACATCGTTTTTCAGAAAGCTGGATGGGTTTCAGCCTTGTGAATTAAATGAATTGAAGGCCGGGACCCATGTATTTGCTGTTTATGGTGACAACTTTTTTAAAAGTGCAAATTATACAATAGAAGCCCTGTGTGCTGCACCTTTTAGTGAAGAAAAAGAAAATTTAAGAAGTATAGAAGCTCAAATTTTGTCTAAAAGGGCCGAAATATCAAAGTTTGAGGCAGAATATCGAGAGGTTCTGGCTCAATTCTCAGAGATGACAAGTAGATATGCACATGAAATTCAATCAATTGACGAGCTACTGAAGCATAGAAATGAAATACATGCATCATACACTATTACTCCCTTTAAACGGAGTACAAGCAAGAGCAGAAGTAAAAGTTCTTCCAAGGAGAACAAAGAAGATGGCCAAACAAGAGAGAAGAGGAGTACAAGAGATCGGCCAAAGAAGAAGAAATGGTATAACCTCCACTTAAGAGTTGATAAGAGAAAGGCGTGCTAA 1254 0.4131 MPGHRSKSEKHDGGEKQLRRDPYEVLGVSRNSTDQEIKTAYRKMALKYHPDKNANDPKAADMFKEVTFSYNILSDPDKRRQYDSAGFEAVESDNQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSASVLEEALNGLVTIRPLPLGHYISKRVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDQEDNGGLSLALQEDSAKTGKATSAGMYFLGFPVYRLDQTMNSVSGYCNKIIAAAKDPDTSFFRKLDGFQPCELNELKAGTHVFAVYGDNFFKSANYTIEALCAAPFSEEKENLRSIEAQILSKRAEISKFEAEYREVLAQFSEMTSRYAHEIQSIDELLKHRNEIHASYTITPFKRSTSKSRSKSSSKENKEDGQTREKRSTRDRPKKKKWYNLHLRVDKRKAC* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01541 417 PRINTS DnaJ domain signature 58 78 IPR001623 -
Lapu2g01541 417 PRINTS DnaJ domain signature 23 41 IPR001623 -
Lapu2g01541 417 PRINTS DnaJ domain signature 41 56 IPR001623 -
Lapu2g01541 417 PRINTS DnaJ domain signature 78 97 IPR001623 -
Lapu2g01541 417 Coils Coil 306 326 - -
Lapu2g01541 417 MobiDBLite consensus disorder prediction 375 394 - -
Lapu2g01541 417 FunFam Chaperone protein dnaJ 16 4 103 - -
Lapu2g01541 417 CDD DnaJ 21 75 IPR001623 -
Lapu2g01541 417 Pfam DnaJ domain 21 83 IPR001623 -
Lapu2g01541 417 ProSitePatterns Nt-dnaJ domain signature. 63 82 IPR018253 -
Lapu2g01541 417 ProSiteProfiles dnaJ domain profile. 21 86 IPR001623 -
Lapu2g01541 417 Gene3D DnaJ domain 5 104 IPR036869 -
Lapu2g01541 417 SMART dnaj_3 20 78 IPR001623 -
Lapu2g01541 417 MobiDBLite consensus disorder prediction 363 405 - -
Lapu2g01541 417 MobiDBLite consensus disorder prediction 1 23 - -
Lapu2g01541 417 MobiDBLite consensus disorder prediction 1 30 - -
Lapu2g01541 417 SUPERFAMILY Chaperone J-domain 20 90 IPR036869 -
Lapu2g01541 417 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 5 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01541 Lapu-Chr2 28791085 28796661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01541 19 84 C2H2 Transcription Factor Family AT1G74250 42.254 6.33e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01541 - - gmx:100800929 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01541 2 28791085 28796661 Lapu2g01541 2 28791085 28796661 ECH