Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01539 ATGGAAAAGGATATCTGTGATCTTTCTCCAACATGGGATGGTGATAATGGCAACTCTACAGAGAAAAGGCTCAGGTTATTTGGCTTTGAGCTAAACCCTTCTAAAGAGGGCTGTGTCAAAGAGTCTGGTGAAGGAGATGAAAGTGTAAACTCCTCTAACTCAGTCTCATCAGGAGGAGACAAAACTGTGCAAGAAAAGACCTCAGCCAAAGACCCAGATGAGAAGAAGTTCGAGTGCCAATACTGTTTCAAAGAATTTGCAAACTCACAAGCATTAGGAGGCCACCAAAATGCCCACAAGAAAGAGAGAATGAAGAAGAAGAGGTTGCAGCTTCAATCTATAAACCGTTACCTCCAACACCCTTTTCAAACCAACCATGGCTTTGCTTACCAAGCCTCAGATAGTCCTTGGTTCTATGACCCCTCTACCTATAATTCTGAGTTCACCCTTTGTGAAGAACCTCAGATTAGCTTCAATTCAAATGTTTTAGAAACCAACTTTTCTTGCGACCAGAAATCTAGTTGGTATTCTCTGTCATCACACTCACCTTCACAACAAGATACTTGCATGTTTACTTTCTCCAATGCAAATAATAACACTCCTTTCATCTATAAACCTTGCCACTTCCCTTCTTCAAACCAGAGTCATACCAAAGCCCTAGATCTTCAACTAGGCCTCAACTTGGAGTCAAATACAAGAAGTTCTCTAAGGAGGATGTAA 720 0.4125 MEKDICDLSPTWDGDNGNSTEKRLRLFGFELNPSKEGCVKESGEGDESVNSSNSVSSGGDKTVQEKTSAKDPDEKKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQSINRYLQHPFQTNHGFAYQASDSPWFYDPSTYNSEFTLCEEPQISFNSNVLETNFSCDQKSSWYSLSSHSPSQQDTCMFTFSNANNNTPFIYKPCHFPSSNQSHTKALDLQLGLNLESNTRSSLRRM* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01539 239 SUPERFAMILY beta-beta-alpha zinc fingers 73 104 IPR036236 -
Lapu2g01539 239 PANTHER ZINC FINGER PROTEIN 5 18 229 IPR044299 GO:0010090
Lapu2g01539 239 MobiDBLite consensus disorder prediction 45 63 - -
Lapu2g01539 239 Gene3D Classic Zinc Finger 51 128 - -
Lapu2g01539 239 FunFam zinc finger protein 5 51 127 - -
Lapu2g01539 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 104 IPR013087 -
Lapu2g01539 239 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Lapu2g01539 239 MobiDBLite consensus disorder prediction 34 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01539 Lapu-Chr2 28762129 28762848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01539 11 113 C2H2 Transcription Factor Family AT5G06650 41.509 1.20e-16 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu2g01539 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01539 - - gmx:100527006 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01539 2 28762129 28762848 Lapu2g01539 2 28762129 28762848 ECH