Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01536 ATGAGTTCATCCTCAGGGAACAAATCCTCTTCTTCTCCTTCTTCTTCAGTGTTGAAACTATTTGGTTTTCCTTTCAGGGCTAGCAACGATGACGATGACAAAGGTGGTAAGAAAATCCAGTGCCCGTTTTGCCATCGCAAATTTCAGAATTTGCAAGCAATGGGGGGTCACCAGAATGCGCATAGAAGAGAAAGACAAATGGCTAGGTTGGCCCAATTTGAGTATATGCGTGAACATCAAAGAAACCAAATATTCCAACCAGTTACACCTCTTGTGGTTGCACAAGGAGCATCACCAACCTCTGTTTTCGGTAGTGCAACTCGGTTCAGGACAGCACCTGTGGCGGAGCCACCAGGTACGCGCCACCGTAACGTACAAGTATCGGTAGTAGGGCTTGACGATGATGTCGATCTAGAACTGAGATTATCTATCTCTTCTAAGGAGGCTGGGATGTGA 456 0.4627 MSSSSGNKSSSSPSSSVLKLFGFPFRASNDDDDKGGKKIQCPFCHRKFQNLQAMGGHQNAHRRERQMARLAQFEYMREHQRNQIFQPVTPLVVAQGASPTSVFGSATRFRTAPVAEPPGTRHRNVQVSVVGLDDDVDLELRLSISSKEAGM* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01536 151 SUPERFAMILY beta-beta-alpha zinc fingers 35 67 IPR036236 -
Lapu2g01536 151 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Lapu2g01536 151 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Lapu2g01536 151 PANTHER ZINC FINGER PROTEIN 5 7 99 IPR044299 GO:0010090
Lapu2g01536 151 Gene3D Classic Zinc Finger 27 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01536 Lapu-Chr2 28681541 28682071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01536 7 69 C2H2 Transcription Factor Family AT5G06650 39.744 1.68e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01536 - - pvu:PHAVU_002G076300g 249.21