Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01518 ATGTCTCGCACCTGCTCACAGTGTGGGAACAACGGCCACAACTCACGGACATGCACCGACGGTGGCGCCGCTGTCTCCGGCGCCGCGTCTCCCCGGGAGAACGGCTTCATGCTGTTTGGCGTGCGAGTCGCCGAAGGAATTTCCTCCTTCAGGAAGAGTGCTAGCATGAACAACCTCTCTCAGTACGACGCGGACTCCAACACCGCCGACGCCGGCTACGCCTCCGACGACGTCGTTCACGCCTCTGGCCGCACGCGCGAGCGCAAGCGAGGTGTTCCTTGGACGGAGGAAGAACACAGACTGTTCCTGTTAGGGTTGCACAAAGTCGGAAAAGGAGATTGGAGAGGAATTTCCAGAAACTTCGTCAAAACTCGCACGCCAACTCAGGTCGCCAGTCACGCTCAGAAGTACTTCCTCCGCCGTCACAACCAGAACCGCCGCCGCCGGAGATCTAGCCTCTTCGACATCACCACCGATACGGTGATGGAATCTTCCACAATAATGGAAGAAGAGCAAGTTCAGCAAGAAACGGCGGCTGCGCCTATCCCCGCAGCATATCCGCCGTCTCATTATGGCGGTTTCCCTGGCGCAGGTTTTCCGATGAGTCTATCTCCAGTGGTGTTGCCGGCGAGCGGGGAGAGGCTAGCCAAGCCCATAAGGCCGACGCCGATTTTGCCGGTGCCGCCGTCTTCGAAGATGGCTAGTTTGAACTTGAAAGAGAAAGCTTCTCCGACAACTCTCATAGAGCCTTTACCGTTGTCGTTGAATCTGCCACCGCCGACGCCACGGTCACAGGATCAGTCGCCGGCGAGTAGTGACCACTCGTCGCCGTCGTCATCGTCATCAGCTTTTCAGTCTATGTCTGCAGGGAAGTTCGGCGGCGGTGGGGATAGTATCATCAGCGTTGCTTGA 912 0.5789 MSRTCSQCGNNGHNSRTCTDGGAAVSGAASPRENGFMLFGVRVAEGISSFRKSASMNNLSQYDADSNTADAGYASDDVVHASGRTRERKRGVPWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTIMEEEQVQQETAAAPIPAAYPPSHYGGFPGAGFPMSLSPVVLPASGERLAKPIRPTPILPVPPSSKMASLNLKEKASPTTLIEPLPLSLNLPPPTPRSQDQSPASSDHSSPSSSSSAFQSMSAGKFGGGGDSIISVA* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01518 303 SMART sant 90 140 IPR001005 -
Lapu2g01518 303 CDD SANT 93 138 IPR001005 -
Lapu2g01518 303 FunFam transcription factor MYB1R1 92 143 - -
Lapu2g01518 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Lapu2g01518 303 ProSiteProfiles SANT domain profile. 89 142 IPR017884 -
Lapu2g01518 303 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Lapu2g01518 303 SUPERFAMILY Homeodomain-like 88 141 IPR009057 -
Lapu2g01518 303 MobiDBLite consensus disorder prediction 266 288 - -
Lapu2g01518 303 PANTHER TRANSCRIPTION FACTOR KUA1 1 253 - -
Lapu2g01518 303 MobiDBLite consensus disorder prediction 1 21 - -
Lapu2g01518 303 MobiDBLite consensus disorder prediction 1 26 - -
Lapu2g01518 303 Gene3D - 92 143 - -
Lapu2g01518 303 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Lapu2g01518 303 MobiDBLite consensus disorder prediction 241 303 - -
Lapu2g01518 303 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Lapu2g01518 303 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01518 Lapu-Chr2 28445377 28448228 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu2g01518 Myb_DNA-binding 3.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01518 - - var:108322503 478.789