Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01513 ATGGATCCGGCCGCGATCATCAACGCCGCCGCCAACACCACGTCCTACAACCTCTCGGAGATCTGGCACTTCCCGCCTACCAACACGCCAGACGCCGCTGCCGCGCTCGGCCTGAGTAGGGCCCACTTCGGACACAGGCTCCCGGACTTCGCCCCGGGCCCGGCCCGAGACAGCGGCCCGGGTAGCATTGCCCACAAGAAGAGGCGCGACGCCGAGGATGAGGAATCGACTAAGGGCGTCTCCACCAGCAATGGCGTGAAGGAGGGTGGTGGTGATGGGAAACGGGTTAAGACAACAGGGAACCACAAGGGTGAGAGTGCGAGAGGAGAAGGAGAAAGCAGTTCAGGAAAGCTTGCGGAGCAAGGTGGAAAGCCACCTTCAGAGCCTCCTTCTAAGCAAGACTACATTCATGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGGGCTAGACGGGAAAAGATTAGTGAGAGGATGAAAATTCTTCAGGATTTGGTCCCGGGTTGTAATAAGGTTATTGGGAAAGCGTTGGTCCTTGATGAGATAATTAATTATATCCAATCGCTTCAGCGGCAAGTAGAGTTTTTGTCAATGAAGCTTGAGGCCGTAAATTCAAGAATGCCCTCCGGAATTGAAGTGTTTCCTCCTAAAGATTTTGATCAGCAAACATTTGATACAACTGGCATCCCATTCGCTTCTCAACCTACAAGAGAGTATAGCCGAGGTTCATCACCAGAGTGGTTACATATGCAGGTGGGGAGTGGCTTTGAAAGAGCAACATAG 798 0.5301 MDPAAIINAAANTTSYNLSEIWHFPPTNTPDAAAALGLSRAHFGHRLPDFAPGPARDSGPGSIAHKKRRDAEDEESTKGVSTSNGVKEGGGDGKRVKTTGNHKGESARGEGESSSGKLAEQGGKPPSEPPSKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMPSGIEVFPPKDFDQQTFDTTGIPFASQPTREYSRGSSPEWLHMQVGSGFERAT* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01513 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 194 IPR011598 GO:0046983
Lapu2g01513 265 MobiDBLite consensus disorder prediction 61 77 - -
Lapu2g01513 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 212 IPR036638 GO:0046983
Lapu2g01513 265 Pfam Helix-loop-helix DNA-binding domain 148 195 IPR011598 GO:0046983
Lapu2g01513 265 FunFam Basic helix-loop-helix transcription factor 141 214 - -
Lapu2g01513 265 CDD bHLH_AtBPE_like 134 219 - -
Lapu2g01513 265 MobiDBLite consensus disorder prediction 47 133 - -
Lapu2g01513 265 MobiDBLite consensus disorder prediction 90 110 - -
Lapu2g01513 265 Coils Coil 191 211 - -
Lapu2g01513 265 Gene3D - 141 215 IPR036638 GO:0046983
Lapu2g01513 265 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 68 235 IPR024097 GO:0006355
Lapu2g01513 265 SMART finulus 150 200 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01513 Lapu-Chr2 28339149 28343308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01513 1 265 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 48.958 1.17e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu2g01513 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01513 - - gmx:100794893 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01513 2 28339149 28343308 Lapu2g01513 2 28339149 28343308 ECH
Lapu2g01513 2 28339149 28343308 Lapu2g01513 2 28339149 28343308 PCT