Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu2g01489 | ATGAGTCGCAAGCGAGACAGGCACTATTTCTCCCGCCACGACGCCGCCAAGCGCCGCCGCCCCTTGCCAGAGCCTGTGGAGGAGGAGAGACCGACGACGAGGCCTGCGCCGCCTTCCGCGGTGGTCGTGATGGGCCTCCCTCAAGACTGCTCCGTCCTCGATCTCAAGTCTCGCTTCGAGATCTACGGCGCCATCTCCCGCATCCGCATCGACCGCGACGCCGTCGGTTACATTACTTACCGGTCAAAGGACTCCGCCGACGCCGCCATCGCCGCCGGTATGGATACCTCCTTCGGAATCACGGTTAGCTCCAAAAAGGTTCAGGTGTTGTGGGCAACAGACCCTCTAGCGATGTGGAGGGAAGGAGTTGGTAATAGGAAGGATAAAGGGTATATGTCAAAGCTTGTGCGTGCTGAGGCACCTTTGAGCAAGCATGGAAGAGGTAATAAACTTGCTTCGGCTATAGGGAATACCAAACGTGGTGAGGATAGCTCAGGTAGCTCTGTTTTAGAAGGTCCTTTCAAGGGCCGAGAAATTGTTAAAGCGGTGATGGAAGAATCCGAAAAAGCAGAGAAAAAGGATGAAAAATCAGAACAAGTTGTGTGGAGTTGGGGTGCTGGAACAGAGGGTCAGTTAGGAACACAGATTGTTCAGGATGAGCTCTTTCCTCGACTCCTTCATCAACCCTCTCTCTCTTCCATCTCTTCCCTTGCATGTGGCGGCGCTCATGTCATAGCCCTGACCTCTGCTGGGAAGGTACTTTCATGGGGTAGGGGCAGTTCTGGGCAATTAGGCCATGGAGAGGTTGTGAGTAACGCTTTGTTTCCCAAGGCTGTAACGTCATTGGAGGGCTACTTCATAACCCATGTGGCTGCTGGGTGGAGCCACTCAGGTTTTGTTTCAGATACTGGGTGTGTCTTCACTTGTGGGGATGGCACGTTTGGTCAACTGGGGCATGGGGATTATGCCTCACACTGTTCTCCTGTCAAATTGTCGTGCTTTGTAGATCAGCGTGCTGTGCAGGTTGCATGTGGAATGCGCCATTCCCTTGTCTTGTTGAAAGATTGTATAGGAAATCAAGTTTATGGATTTGGCTCTGGGAAGCGTGGTCAGCTGGGTGTCAGCAACGATAAGGTCAAATCTGTTAATGTTCCTCGACTTGTTAGTGGCTTTGAAGGTGTTGAAATCGTTGGAATTGCTGCAAATGGAGATCATAGTGCTGCAGTATCTGTTGATGGGCACATTTATACCTGGGGAAGAGGCTTCAAGGGCTTTGAGGATGCTCACGTTCCTCATCGCTTAAACACTGTATTGAAATTTACCAAAGTTGCTCTGGGATGGAACCATGCTTTAGCTATGAGTGATGAGGGAGAGGTTTATATGCTAGGTGGAAACCACCTTGGAGTGCTTAGTGATCTTCAGAACATTAGCCCCCCAGCCAAGCATTTACCTGATTTAAGAGAAGTCAATTTGGAGAAAGTCCCTGGCCTTGAAGGGATGAAGATTACTGATATTGCTACCGGAGCCGAGCATTCTGTCATTGTCACAGAGAATGGAGAAATAAGGACATGGGGTTGGGGTGAGCACGGTCAACTTGGTTTAGGGGATACTTCCGACCAAATCAGTCCTGTTACAGTAAGTCTAGGTTATCATCTGAATGAAGCTGAATCAATGAAAGTTTTCTGTGGAAGTGGGTTCACGTTTGCTGTAACCATGCCCTAA | 1722 | 0.5 | MSRKRDRHYFSRHDAAKRRRPLPEPVEEERPTTRPAPPSAVVVMGLPQDCSVLDLKSRFEIYGAISRIRIDRDAVGYITYRSKDSADAAIAAGMDTSFGITVSSKKVQVLWATDPLAMWREGVGNRKDKGYMSKLVRAEAPLSKHGRGNKLASAIGNTKRGEDSSGSSVLEGPFKGREIVKAVMEESEKAEKKDEKSEQVVWSWGAGTEGQLGTQIVQDELFPRLLHQPSLSSISSLACGGAHVIALTSAGKVLSWGRGSSGQLGHGEVVSNALFPKAVTSLEGYFITHVAAGWSHSGFVSDTGCVFTCGDGTFGQLGHGDYASHCSPVKLSCFVDQRAVQVACGMRHSLVLLKDCIGNQVYGFGSGKRGQLGVSNDKVKSVNVPRLVSGFEGVEIVGIAANGDHSAAVSVDGHIYTWGRGFKGFEDAHVPHRLNTVLKFTKVALGWNHALAMSDEGEVYMLGGNHLGVLSDLQNISPPAKHLPDLREVNLEKVPGLEGMKITDIATGAEHSVIVTENGEIRTWGWGEHGQLGLGDTSDQISPVTVSLGYHLNEAESMKVFCGSGFTFAVTMP* | 574 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu2g01489 | 573 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 251 | 303 | IPR000408 | - | |
| Lapu2g01489 | 573 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 359 | 412 | IPR000408 | - | |
| Lapu2g01489 | 573 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Lapu2g01489 | 573 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 41 | 92 | IPR000504 | GO:0003723 | |
| Lapu2g01489 | 573 | SUPERFAMILY | RCC1/BLIP-II | 358 | 571 | IPR009091 | - | |
| Lapu2g01489 | 573 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Lapu2g01489 | 573 | SUPERFAMILY | RNA-binding domain, RBD | 27 | 120 | IPR035979 | GO:0003676 | |
| Lapu2g01489 | 573 | Gene3D | - | 1 | 116 | IPR012677 | - | |
| Lapu2g01489 | 573 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 199 | 250 | IPR000408 | - | |
| Lapu2g01489 | 573 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 413 | 456 | IPR000408 | - | |
| Lapu2g01489 | 573 | PRINTS | Chromosome condensation regulator RCC1 signature | 514 | 535 | IPR000408 | - | |
| Lapu2g01489 | 573 | PRINTS | Chromosome condensation regulator RCC1 signature | 253 | 269 | IPR000408 | - | |
| Lapu2g01489 | 573 | PRINTS | Chromosome condensation regulator RCC1 signature | 200 | 216 | IPR000408 | - | |
| Lapu2g01489 | 573 | PRINTS | Chromosome condensation regulator RCC1 signature | 446 | 464 | IPR000408 | - | |
| Lapu2g01489 | 573 | PRINTS | Chromosome condensation regulator RCC1 signature | 234 | 247 | IPR000408 | - | |
| Lapu2g01489 | 573 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 304 | 355 | IPR000408 | - | |
| Lapu2g01489 | 573 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 39 | 114 | IPR000504 | GO:0003723 | |
| Lapu2g01489 | 573 | CDD | RRM_SF | 41 | 103 | - | - | |
| Lapu2g01489 | 573 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 457 | 518 | IPR000408 | - | |
| Lapu2g01489 | 573 | MobiDBLite | consensus disorder prediction | 16 | 31 | - | - | |
| Lapu2g01489 | 573 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 360 | 409 | IPR000408 | - | |
| Lapu2g01489 | 573 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 519 | 570 | IPR000408 | - | |
| Lapu2g01489 | 573 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 201 | 247 | IPR000408 | - | |
| Lapu2g01489 | 573 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 251 | 299 | IPR000408 | - | |
| Lapu2g01489 | 573 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 304 | 352 | IPR000408 | - | |
| Lapu2g01489 | 573 | MobiDBLite | consensus disorder prediction | 147 | 170 | - | - | |
| Lapu2g01489 | 573 | SMART | rrm1_1 | 40 | 110 | IPR000504 | GO:0003723 | |
| Lapu2g01489 | 573 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 342 | 352 | IPR000408 | - | |
| Lapu2g01489 | 573 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 519 | 573 | IPR000408 | - | |
| Lapu2g01489 | 573 | Gene3D | - | 145 | 425 | IPR009091 | - | |
| Lapu2g01489 | 573 | Gene3D | - | 426 | 572 | IPR009091 | - | |
| Lapu2g01489 | 573 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 179 | 281 | - | - | |
| Lapu2g01489 | 573 | SUPERFAMILY | RCC1/BLIP-II | 199 | 377 | IPR009091 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu2g01489 | Lapu-Chr2 | 28048198 | 28054281 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu2g01489 | 1 | 168 | Homeobox Transcription Factor Family | AT1G27050 | 52.778 | 2.31e-50 | 171 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu2g01489 | - | - | gmx:100793672 | 951.044 |