Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01488 ATGGCGGGTGGCAAGCTTCATGCTGGTTCAAACATGTCACTTCTCCTCCAAAACGAAAGGCTCCCTTGCTCCTCTGAAGTCCTCGAGTCTCTTTGGGCTCACACCTCTAACCCTGCTTCCTTCCAAGGTTCAAAATCTATGGTTGATTTTGAGAATGTTAGTGGGGGAAGGGTGACGGATAGGCCCTTTTTTCAGGCGTTGGAGAAGGAAGAGAACTGTGATGAGGATTATGACGGGTGCTTCCATCAACCGGGTAAGAAAAGGAGGCTTACAAGCGAACAAGTTCAGTTCCTTGAAAGGAACTTTGAGGTCGAGAACAAGCTTGAACCTGAAAGGAAGGTCCAACTTGCAAAGGAGCTTGGCTTGCAGCCAAGGCAAGTGGCTATATGGTTCCAAAACCGAAGGGCAAGGTTCAAGACCAAGCAGCTAGAAAAAGATTATGGCACATTGAAAGCTAGTTATGACAGACTCAAAGGTGACTATGAAAGTCTTCTTCAAGAGAATGACCAGTTAAAAGCAGAGGTGAATTCTCTGGAGAGCAAATTGATTCTTAGAGATAAAGAGAAGGAGAATTCGGACGACAAGTCATCTCCTGATGCTGTCAATTCACCCCACAAAGAGCCTATGGATTTAATTTCAAATTCAACATCTGAAAATGGGACCAAAGTGTCACTCCCTATTATGGTAACATGCAAGCAAGAAGATGCCAATTCCGCCAAAAGTGATGTGCTTGATTCGGACAGCCCACATTGCACTGATGGGAACCATCCCTCTTCATTCTTGGAGCCTGCTGATTCCTCCCATGCTTTTGAACCAGACCACTCAGACTTCTCCCAAGATGAAGAGGATAACCTTAGTGAAAGCCTTTTGACCCTCCCTTGCTTACCAAAGGTTGAAGAAGCCTGCTATGACGACCCTCCTGAAAACTCTTGTAATTTTGGCTTCCATGTTGAGGATCAAACCTTCTGTTTCTGGCCCTACTGA 984 0.4553 MAGGKLHAGSNMSLLLQNERLPCSSEVLESLWAHTSNPASFQGSKSMVDFENVSGGRVTDRPFFQALEKEENCDEDYDGCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDRLKGDYESLLQENDQLKAEVNSLESKLILRDKEKENSDDKSSPDAVNSPHKEPMDLISNSTSENGTKVSLPIMVTCKQEDANSAKSDVLDSDSPHCTDGNHPSSFLEPADSSHAFEPDHSDFSQDEEDNLSESLLTLPCLPKVEEACYDDPPENSCNFGFHVEDQTFCFWPY* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01488 327 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Lapu2g01488 327 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Lapu2g01488 327 Pfam Homeobox associated leucine zipper 141 182 IPR003106 GO:0006355|GO:0043565
Lapu2g01488 327 CDD homeodomain 84 142 IPR001356 GO:0003677
Lapu2g01488 327 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Lapu2g01488 327 Gene3D - 89 135 - -
Lapu2g01488 327 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 68 228 IPR045224 GO:0003700
Lapu2g01488 327 SUPERFAMILY Homeodomain-like 76 143 IPR009057 -
Lapu2g01488 327 SMART HOX_1 83 145 IPR001356 GO:0003677
Lapu2g01488 327 MobiDBLite consensus disorder prediction 183 220 - -
Lapu2g01488 327 Gene3D - 136 184 - -
Lapu2g01488 327 MobiDBLite consensus disorder prediction 238 285 - -
Lapu2g01488 327 FunFam Homeobox-leucine zipper protein HAT5 79 143 - -
Lapu2g01488 327 Coils Coil 154 181 - -
Lapu2g01488 327 MobiDBLite consensus disorder prediction 183 201 - -
Lapu2g01488 327 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Lapu2g01488 327 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Lapu2g01488 327 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01488 Lapu-Chr2 28019973 28022553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01488 43 253 Homeobox Transcription Factor Family AT3G01470 44.550 2.27e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu2g01488 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01488 - K09338 gmx:547565 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01488 2 28019973 28022553 Lapu2g01488 2 28019973 28022553 ECH