Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu2g01485 | ATGCTGATGGACCTGTGTGCCCAAATCCAGAGATCCTTCGACGACCGTTACACGCGCCACGCGCGCGACTCGCTCGACGAATTGCCTGATAGCTTTACCATCACCGACCCACACATCCCCGGCCACCCTATCGTCTTCGCGAGCCCGGGCTTCCTCAAGCTCACGGGCTACGCGCGCTGCGAGGTCCTGGGCCAGACCGCCGCCGTCTTTCAGGGCCCGCGCACTTCCCGGAGGTCCGTCATGGAAATCCGCGAGGCCGTCCGTGAGGAGCGCAACGCGGAGGTCGTTTTGCTCAACTACCGCAAGGATGGCACGCCGTTTTGGATGCTCTTCCGCGTCTGTCCCGTGTTCAGCGGCGACGGCGGCGCCGTCGTCCACTTCGTCGCCGTTCAGGTCCCGCTACACAAAAAGGATGGCTCCGGCGTCAGGGATTTCGGCTTCGGATGCTGTCGAAAGGAAGTGTGCTCTGATTCGTTATCGGAGCTTGGTCGCGTGTGTTCCGTGGAGCAAGTGCTGGAACGTGATGTCATTGAATTGGAGAGGGAAGAGCCGTGTGTGGCGAGTGATGAGGAGAAGCGAAGTGCTATTACTGCCACCGACAATATCTTCTCTGTGCTAACCCATTTTAGTGAGGCGACGGGCAGATTAGTGTGTAGGAAGAGGTGCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCGCATTTACCGGACATGCCTATTGTTTATGTTAGTGATGCATTCTTGAAATTGACAGGTTATGGAAGAAATGAAGTTTTGGGTCGCAACTGTAGGTTTTTAGGTGGAACAGATACTGATACCTCTACTTTATATCTGATAAAGGAAAGCATTAAAGCTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGACGAAAGTTCATTTTGGAATTTTCTTCACATCTCACCCGTTCGTGATGCTTCCGGCAAGGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAATGACGATAGCCAGTGTTTGAGTCCAGAGAAGAGGCAGCTTAGTGTGGTTGGTGTAGTAAAGGTTGCAGTGAGGAGTTTATCAATGACTGCGGGATCTTCCAAGTCGTAG | 1158 | 0.513 | MLMDLCAQIQRSFDDRYTRHARDSLDELPDSFTITDPHIPGHPIVFASPGFLKLTGYARCEVLGQTAAVFQGPRTSRRSVMEIREAVREERNAEVVLLNYRKDGTPFWMLFRVCPVFSGDGGAVVHFVAVQVPLHKKDGSGVRDFGFGCCRKEVCSDSLSELGRVCSVEQVLERDVIELEREEPCVASDEEKRSAITATDNIFSVLTHFSEATGRLVCRKRCSIPDVGLLSTSLIISLGRIKQSFVLTNPHLPDMPIVYVSDAFLKLTGYGRNEVLGRNCRFLGGTDTDTSTLYLIKESIKAEQPCTVRILNYRKDESSFWNFLHISPVRDASGKVAYFVGVQIEDSNKNDDSQCLSPEKRQLSVVGVVKVAVRSLSMTAGSSKS* | 386 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu2g01485 | 385 | NCBIfam | PAS domain S-box protein | 257 | 342 | IPR000014 | - | |
| Lapu2g01485 | 385 | NCBIfam | PAS domain S-box protein | 43 | 125 | IPR000014 | - | |
| Lapu2g01485 | 385 | SMART | pas_2 | 232 | 305 | IPR000014 | - | |
| Lapu2g01485 | 385 | SMART | pas_2 | 19 | 88 | IPR000014 | - | |
| Lapu2g01485 | 385 | FunFam | protein TWIN LOV 1 | 244 | 380 | - | - | |
| Lapu2g01485 | 385 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 247 | 343 | IPR035965 | - | |
| Lapu2g01485 | 385 | Gene3D | PAS domain | 14 | 138 | - | - | |
| Lapu2g01485 | 385 | Pfam | PAS domain | 244 | 343 | IPR000014 | - | |
| Lapu2g01485 | 385 | Pfam | PAS domain | 30 | 131 | IPR000014 | - | |
| Lapu2g01485 | 385 | ProSiteProfiles | PAS repeat profile. | 257 | 279 | IPR000014 | - | |
| Lapu2g01485 | 385 | ProSiteProfiles | PAC domain profile. | 304 | 358 | IPR000700 | - | |
| Lapu2g01485 | 385 | CDD | PAS | 253 | 342 | IPR000014 | - | |
| Lapu2g01485 | 385 | SMART | pac_2 | 94 | 137 | IPR001610 | - | |
| Lapu2g01485 | 385 | SMART | pac_2 | 307 | 349 | IPR001610 | - | |
| Lapu2g01485 | 385 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 29 | 130 | IPR035965 | - | |
| Lapu2g01485 | 385 | CDD | PAS | 28 | 130 | IPR000014 | - | |
| Lapu2g01485 | 385 | ProSiteProfiles | PAS repeat profile. | 17 | 90 | IPR000014 | - | |
| Lapu2g01485 | 385 | FunFam | Protein TWIN LOV 1 isoform D | 31 | 208 | - | - | |
| Lapu2g01485 | 385 | Gene3D | PAS domain | 244 | 383 | - | - | |
| Lapu2g01485 | 385 | PANTHER | PROTEIN TWIN LOV 1 | 8 | 375 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu2g01485 | Lapu-Chr2 | 27941073 | 27946211 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu2g01485 | 16 | 373 | AGC Kinase Gene Family | AT5G58140 | 30.941 | 9.26e-60 | 206 |