Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01477 ATGGCTAAATTACACAGCATCCTTTGTTTAACGTGTTTGGTGGTCACCATACCTACCTTGTACGCCAATGTCTTAGAGGATGAGGAGTTTTGGACTAGGCAAACTGAATTATTTGATAATTATTGGAAGGAAAGAGAAGAAGCTGCTGAAAAAGTGAACCAGGAAGCTTATATTCTTGACCCATATTCATTCGCCCAAAACATCACTAACAACGTTAGCGAGCTGATAAGTGGTGAGGATGATGGAAGAAGGAATTTGGGGGGAAAAATAGTAAAAGGTCCATGCGCGGCAACAAACCCGATTGACAGATGTTGGAGGTGTGACGTCAACTGGGCAAAGAACCGCAAGAGGCTGGCAGATTGTGCGCAAGGTTTTGGCAGAAACACTATTGGCGGAAAGAATGGTCCATTCTATGAGGTAACCAGTAACTTAGATAATGACATGGTCAATCCTGTTCCTGGTACCCTTAGGCATGCGGTTACACGAACTGGACCCTTGTGGATCATCTTTGCTCGTAGCATGGCTATTAGGCTCAGCCAGGAGCTCATTGTGGCAAGTGACAAGACCATTGATGGAAGAGGAGCTGATGTCTACATTATCAATGGGGCTGGTTTTACCCTCCAATTCATCAAGAATGTGATCATCCATGGAATCAAAATTTTTGACATTCATGCTGGCAATGGTGGACTTATTAGAGATTCTGAGCAGCACTATGGTCAAAGGACTCAGAGTGATGGTGATGGAATTTCCATCTTTGGCTCTAGCTTTATTTGGATTGACCATGTTTCCATGAGAAACTGCAGAGATGGATTGATTGATGCCATTCAGGGTTCCACTGCTATTACCATCTCCAATAGCCATTTCACAGACCACAATGAGGTGATGTTGTTTGGTGCTAGTGACAGCTTTGATGGTGATAAGATAATGCAGATCACACTGGTGTTCAACCACTTTGGTAAGAGATTAGTCCAAAGGATGCCAAGATGCAGATATGGTTTTATCCATGTGGTTAACAACGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCATGCATCCTACAATTATTAGTGAGGGCAACCGATTCATAGCCCCTAACAACCACAATGCTAAACAGATAACAAAAAGGGAATACTCGCCAGAGGAAGTGTGGAAAAACTGGCAATGGAGATCAATCAAGGATGAGCTACAGAATGGAGCTTTTTTCGTGGAAAGTGGGCAGCCTCTAAGTGAAGAGAGGCCCTTCGCAAAGGCCGACATGATATCATCCAAGCCTGGTACATATGTGGGAAGGCTCACTCGCTATGCTGGCGCCCTTAGATGCACAGTGGGCAAGCCTTGTTAG 1350 0.443 MAKLHSILCLTCLVVTIPTLYANVLEDEEFWTRQTELFDNYWKEREEAAEKVNQEAYILDPYSFAQNITNNVSELISGEDDGRRNLGGKIVKGPCAATNPIDRCWRCDVNWAKNRKRLADCAQGFGRNTIGGKNGPFYEVTSNLDNDMVNPVPGTLRHAVTRTGPLWIIFARSMAIRLSQELIVASDKTIDGRGADVYIINGAGFTLQFIKNVIIHGIKIFDIHAGNGGLIRDSEQHYGQRTQSDGDGISIFGSSFIWIDHVSMRNCRDGLIDAIQGSTAITISNSHFTDHNEVMLFGASDSFDGDKIMQITLVFNHFGKRLVQRMPRCRYGFIHVVNNDYTHWEMYAIGGSMHPTIISEGNRFIAPNNHNAKQITKREYSPEEVWKNWQWRSIKDELQNGAFFVESGQPLSEERPFAKADMISSKPGTYVGRLTRYAGALRCTVGKPC* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01477 449 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Lapu2g01477 449 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Lapu2g01477 449 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Lapu2g01477 449 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Lapu2g01477 449 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Lapu2g01477 449 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Lapu2g01477 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Lapu2g01477 449 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Lapu2g01477 449 SMART amb_all 173 370 IPR002022 -
Lapu2g01477 449 Gene3D - 98 442 IPR012334 -
Lapu2g01477 449 PANTHER PECTATE LYASE 18-RELATED 50 447 IPR045032 GO:0030570
Lapu2g01477 449 Pfam Pectate lyase, N terminus 38 86 IPR007524 GO:0030570
Lapu2g01477 449 Pfam Pectate lyase 182 364 IPR002022 -
Lapu2g01477 449 SUPERFAMILY Pectin lyase-like 99 440 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01477 Lapu-Chr2 27848754 27851203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01477 13 449 Polysaccharide Lyase AT1G14420 59.251 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01477 K01728 - gmx:100796307 734.947