Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01474 CAAGGAGATACTGAGGAGGAAAACAAGATGTCGCAGGTTGTTCACTCCCTTGGCTTAAAGCATCTCTCACTACGATTCCACTCTTTTGTTCCTCCTAAGTTCATTGTTCCTTTGAATCGGAACTTTTCTCTCATTCTCCCAACATCACTCTCTGTCAAATGCATCCACTCCAACGACGTGAAACCATTCCCACCACTGCCACAGCACCCTATAGTTGCAGAATTGCCGCAAAGGGTGTACGCGGATTACCCCGTTTACACGGGGAAGGGAGTACTCACCTTGACTCCTAAACCTCCGGAATTTGAATTAAAAGCTTCTGGGGCGTTCGTGGTGTCTAGGGAAGGTTATATGTTGCTCCAGTTTGCTCCTTCGGTTGGTACTGAAGAATCCATATATGATTGGAACCAAAAGCAGGTATTCTCACTTTCGGTGAGTGAAATGGGAACTCTAATTAGCCTTGGTGCAATGGAATCTTGGGAATTTTTTCGTAAGACTGCTAAGGCAAAAAGCAACGGAATTGAAGTCAGAAAAGTTTTGAAGGTGGAGCCACTTCTGGATGCTACTGGTCACTCATTTAGCTTAAGTGTTTATAAAAAACCTGCGAACATGGAGGAAACTGAGGAAAAAATCTATCTCCCTGTTACAAAGGCGCAGCTAGCAGTTTTAAGGTCAATTTTCAGTTATATCATGCCTTACCTTCTAGGTTGGAATGCCTTTGCAAGCACCATAAAGCCAGAGGTATATAGTAAAGTGAACAGTACCAACCCCAGATACAGGGCAAACAATGAATGGAACAAATAG 801 0.4357 QGDTEEENKMSQVVHSLGLKHLSLRFHSFVPPKFIVPLNRNFSLILPTSLSVKCIHSNDVKPFPPLPQHPIVAELPQRVYADYPVYTGKGVLTLTPKPPEFELKASGAFVVSREGYMLLQFAPSVGTEESIYDWNQKQVFSLSVSEMGTLISLGAMESWEFFRKTAKAKSNGIEVRKVLKVEPLLDATGHSFSLSVYKKPANMEETEEKIYLPVTKAQLAVLRSIFSYIMPYLLGWNAFASTIKPEVYSKVNSTNPRYRANNEWNK* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01474 266 Gene3D Transcriptional Coactivator Pc4; Chain A 72 254 IPR009044 GO:0003677|GO:0006355
Lapu2g01474 266 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 73 266 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lapu2g01474 266 SUPERFAMILY ssDNA-binding transcriptional regulator domain 77 265 IPR009044 GO:0003677|GO:0006355
Lapu2g01474 266 Pfam Whirly transcription factor 85 225 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01474 Lapu-Chr2 27820615 27823881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01474 75 266 Whirly Transcription Factor Family AT1G14410 53.646 1.75e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Lapu2g01474 Whirly 5.6e-44 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01474 K26559 - pvu:PHAVU_002G089800g 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01474 2 27820615 27823881 Lapu2g01474 2 27820615 27823881 ECH
Lapu2g01474 2 27820615 27823881 Lapu2g01474 2 27820615 27823881 PCT