Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01458 ATGTCGGACGAGGAACACCACTTTGAGTCAAAGGCTGATGCTGGAGCATCAAAGACATTTCCCCAACAAGCTGGAACTATCCGCAAAAATGGTTACATTGTCATCAAGAACAGGCCATGCAAGGTTGTGGAGGTTTCAACTTCCAAAACTGGCAAGCATGGACACGCAAAGTGTCACTTTGTTGGAATTGACATCTTCACGGGCAAAAAGCTTGAGGATATTGTGCCATCTTCCCATAACTGTGATGTTCCTCATGTCAATCGTACTGACTACCAGCTCATCGATATATCAGAGGATGGATTTGTGAGTTTGCTGACAGAGAGTGGTGATACTAAGGATGACCTTCGACTTCCAACCGATGAAAATCTGCTTTCGCAGCAGATCAAGGATGGATTTGCTGAGGGCAAAGATCTGGTTCTGTCTGTTATGTCTTCTATGGGAGAGGAGCAGATTTCTTCCCTTAAGGACATTGGTCCCAAGTAA 483 0.4493 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGDTKDDLRLPTDENLLSQQIKDGFAEGKDLVLSVMSSMGEEQISSLKDIGPK* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01458 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 158 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lapu2g01458 160 Gene3D - 86 159 IPR012340 -
Lapu2g01458 160 Gene3D - 1 85 IPR014722 -
Lapu2g01458 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 155 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lapu2g01458 160 MobiDBLite consensus disorder prediction 1 21 - -
Lapu2g01458 160 PIRSF Transl_init_eIF5A 1 158 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lapu2g01458 160 NCBIfam translation initiation factor IF-5A 18 155 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lapu2g01458 160 FunFam Eukaryotic translation initiation factor 5A 86 159 - -
Lapu2g01458 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lapu2g01458 160 SMART eIF_5a_2 85 155 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lapu2g01458 160 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Lapu2g01458 160 SUPERFAMILY Nucleic acid-binding proteins 86 157 IPR012340 -
Lapu2g01458 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Lapu2g01458 160 CDD S1_eIF5A 86 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01458 Lapu-Chr2 27621521 27623503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01458 1 160 Eukaryotic Initiation Factors Gene Family AT1G13950 86.875 2.53e-101 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01458 K03263 K02180 pvy:116132858 308.145