Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01440 ATGGGAAGGTCACCATGCTGTGAGAAGACGGGGCTAAAAAAGGGACCATGGACACCAGAAGAAGACCAAAAGCTCATTGCTTTCATTGAAAACCATGGCCATGGAAGCTGGCGTGCTTTGCCTGCAAAAGCTGGGCTTAGAAGATGTGGAAAGAGTTGCAGACTGAGGTGGACTAATTACCTGCGACCTGATATAAAACGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACCATTATTCAACTCCATGCTCTTCTAGGAAACAGATGGTCAGCCATAGCATCTCACTTGCCCAAGAGAACCGACAATGAGATCAAGAACTATTGGAACACCCACCTCAAGAAAAGGCTCGACAAAATGGGCATAGACCCCACCACCCACAAGCCAAAACTCGAGTCCCTAATCCACTTCAAAGATGGCTCCAACCTCAGCCACATGGCTCAGTGGGAGAGTGCTCGCCTCGAAGCCGAAGCCAGACTCGTACGAGAATCCAAGTTGCAAGAACAAAACAACCTCGTATTAACCTCTTCCTCCTCACCACCACCACCACCACAACAACCTAGGCTCATTCTCAACAAAATCACACCCCAACACCACCACCACCACCACCACCACCAACCCTCACTACCCCCGTGCCTCGACGTGCTCAAAGCATGGCAAAGTTCATGCTCAGACAACAGCAACAACATCAACAAATACTCATCACTGCACGACAAGAAGAAAACCATGCATGTACATAGCATGTATGCCATGATGCTCGCCACTGATGACCTTGAATCCCCAACATCCACCTTGTGCTTCCCCGAGAGTGTGCAAGTCAGTAATAATAACATTATGGTGTCGACCAACCAAGTTGGGTTAATCAATGAGAACTATTTACTTCCTCCAACTTCTGTGGAAGAGTTTATGACCAAAAGTTTAGGAACGTGCGGTGAGGGTGCGACCGTGAAGGAAGATGCTTGCTGTGGCGGTGATGGTGACAACCATGTGTCGTGGAGGTACTTCACCAAACACAACACTGATCATGATGAAGAACTCGCTGAAACTGAGAAGAGAATCATGTACGACACGATGCCATGTTTGCACGATGATGATATAATGGTGGTGGCTGTTGATGCATTAAGAGGTGCTGGTCGTTATGGTAATAATAATGATAATAATAATAATAACAACATGGAGGCATTTGCACCTCTATCAAGCAATGTCAATATGGTTGTTGGTTTCAATAACCACGTGCAGGATTATGACTCCAACCAAGATTTGGCGACGGAGAACTTGGAAGTGAACTTCGAGGAGAATAAGGATTATTGGAATAGCATGCTTGGTTATAAGTGA 1332 0.4632 MGRSPCCEKTGLKKGPWTPEEDQKLIAFIENHGHGSWRALPAKAGLRRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIASHLPKRTDNEIKNYWNTHLKKRLDKMGIDPTTHKPKLESLIHFKDGSNLSHMAQWESARLEAEARLVRESKLQEQNNLVLTSSSSPPPPPQQPRLILNKITPQHHHHHHHHQPSLPPCLDVLKAWQSSCSDNSNNINKYSSLHDKKKTMHVHSMYAMMLATDDLESPTSTLCFPESVQVSNNNIMVSTNQVGLINENYLLPPTSVEEFMTKSLGTCGEGATVKEDACCGGDGDNHVSWRYFTKHNTDHDEELAETEKRIMYDTMPCLHDDDIMVVAVDALRGAGRYGNNNDNNNNNNMEAFAPLSSNVNMVVGFNNHVQDYDSNQDLATENLEVNFEENKDYWNSMLGYK* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01440 443 CDD SANT 69 112 IPR001005 -
Lapu2g01440 443 CDD SANT 16 61 IPR001005 -
Lapu2g01440 443 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lapu2g01440 443 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu2g01440 443 SMART sant 66 114 IPR001005 -
Lapu2g01440 443 SMART sant 13 63 IPR001005 -
Lapu2g01440 443 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 240 - -
Lapu2g01440 443 Gene3D - 13 66 - -
Lapu2g01440 443 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu2g01440 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lapu2g01440 443 Gene3D - 69 116 - -
Lapu2g01440 443 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lapu2g01440 443 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu2g01440 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lapu2g01440 443 FunFam MYB-related transcription factor 13 66 - -
Lapu2g01440 443 FunFam MYB transcription factor 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01440 Lapu-Chr2 27345192 27348268 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01440 1 209 MYB Transcription Factor Family AT5G15310 71.831 3.28e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu2g01440 Myb_DNA-binding 7.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01440 K09422 - gmx:100792994 629.402