Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01439 ATGGGAAGGAAGCCATGCTGTGAGGTAGGGTTGAAGAAAGGACCATGGACACCAGAAGAAGACAACAAGCTCCTCAACTACGTTAGGAAGCATGGCCATGGAAACTGGCGTTCAGTGCCTGCCAAAGCGGGTCTTGAAAGATGTGGAAAGAGTTGCAGATTGAGGTGGATTAACTATCTCAAACCTGATATAAAACGAGGAAACTTCACCACGGAGGAAGACCACACCATTATTCGACTTCATGCTCTTCTTGGAAATAAATGGTCAATCATAGCAGCTCACCTTCCCCGAAGAACAGACAATGAGATCAAGAACTATTGGAACACCAACATCAAGAAAAGACTCATCGGAATGGGCTTAGATCCCATTACCCACAAAACAATAAAACAGAAGACGTTTGAAGCCTATGGTGGTGACCATGACCAGTCCAAGGACACCATCAATATTTGCCACGTGGCTCAATGGGAGAGTGCTCGACTTGAAGCTGAAGCCAGAGGATCTATGTTGCAAGTTGGATCTGGATCCTCTCATCTCCCTGGGCTAATTTTAAGCAAAATTCCAACTCAACCTTCCCTTTCTTCAGATTCAATGTCAACCGAACACAAGACGGTGTATAACATGTATGCCCTCGTGCTTGCCACAAATCATGATGGTCAGTCATCTGTATCCACTTTGAGCATTCCCATGCTTTCTGCAGCTTCTAATATTCGACAAATGACGAACACAGAAAGTTCACTCTCGTACAAGGGTGATAATAATGTCATGGGAGATAGTAGCCAAATCCAAAAGGTAATGGAAGGTTATGCATCAAACTTACAAGATGACGACATTATGCTGGCTGTGGAAGCATTCAGAACAGCAAGGTCTGAGAGTATTCAAGAGCTGTTTAATGAATCCACTTCCATATAG 909 0.4389 MGRKPCCEVGLKKGPWTPEEDNKLLNYVRKHGHGNWRSVPAKAGLERCGKSCRLRWINYLKPDIKRGNFTTEEDHTIIRLHALLGNKWSIIAAHLPRRTDNEIKNYWNTNIKKRLIGMGLDPITHKTIKQKTFEAYGGDHDQSKDTINICHVAQWESARLEAEARGSMLQVGSGSSHLPGLILSKIPTQPSLSSDSMSTEHKTVYNMYALVLATNHDGQSSVSTLSIPMLSAASNIRQMTNTESSLSYKGDNNVMGDSSQIQKVMEGYASNLQDDDIMLAVEAFRTARSESIQELFNESTSI* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01439 302 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Lapu2g01439 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Lapu2g01439 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Lapu2g01439 302 CDD SANT 68 111 IPR001005 -
Lapu2g01439 302 CDD SANT 15 60 IPR001005 -
Lapu2g01439 302 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lapu2g01439 302 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Lapu2g01439 302 Gene3D - 67 137 - -
Lapu2g01439 302 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lapu2g01439 302 SMART sant 12 62 IPR001005 -
Lapu2g01439 302 SMART sant 65 113 IPR001005 -
Lapu2g01439 302 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 243 - -
Lapu2g01439 302 Gene3D - 12 65 - -
Lapu2g01439 302 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lapu2g01439 302 FunFam MYB-related transcription factor 12 65 - -
Lapu2g01439 302 FunFam MYB transcription factor 67 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01439 Lapu-Chr2 27284781 27285921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01439 1 165 MYB Transcription Factor Family AT3G01140 70.482 1.33e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu2g01439 Myb_DNA-binding 2.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01439 K09422 - gmx:100790887 462.996