Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01426 ATGCCCAGCAGCAAGTGTTGCATGATCTCTTCACAACAAAACCAGAATGCCCCCACATGTTACCCTTTTCCTTCTCCTCCTTCAATGGGAATGGTCTATGCAGACATGATGGGGTCTCTCTCTCTTGCTACTGTTTCAAATGCTCTTTCATCTCAGGAGAGCTATGATTATGGTCATAGTCATGATCATGGTCATGCTTCTGGGGTGGAAAATGGGAGGAGCACAAGCTGGAGTTTTCCTTTCATGAGGGAGTTCCTTTCCTCAAACTTTGAAGATTGTAGCGACGTTGGGGCTGGGGAGAGTAACAGTAATGAGAAAACAACCAACAATGGCAAGTTTAGTGAAGAAAGTAACCCTAACGAGAACCCTCTTAGTGGCAAAGAGGTAGATAGTGGACACTCTAAACTGTGTGCAAGAGGGCATTGGAGGCCTGCAGAAGATTCCAAGCTCAAGGAGCTTGTGGCTCTTTATGGCCCTCAGAATTGGAACCTCATTGCTGAAAAGCTAGAAGGAAGATCAGGGAAGAGTTGTAGGCTGAGGTGGTTCAACCAGTTAGATCCAAGGATCAACAGAAGAGCTTTCAGTGAAGAGGAGGAAGAGAGGCTAATGCAGGCTCATAGAATTTATGGCAACAAATGGGCCATGATTGCTAGGCTTTTCCCTGGGAGAACAGATAACGCAGTGAAGAATCACTGGCATGTTATAATGGCCAGGAAGTACAGGGAACAATCCAGTGCTTACAGGAGGAGGAGAATGAGCCAGTCCGTTTACAAAAGAGTTGAGCAAAATCCAACCTTTGTTTGCAGCAGGGATAATGCCTCAACCACGGAACAAGAACCATCACCTTCTTATTGTCTCAATCTCCTCCACAATGGAGTAGGAGTCACCAATAACCTGGCTAGTTTCCCATCCTTCCATGGAGTAGGTACTGGTGAGGTTGTTGAGTTTGGCTTAAAAGGTTCTCCACAAAACATGACTGGTGGGAGGGAAACAATGTCAAACACCCCACAAGTTGGCTTGCGTGCTCAAGCTCAGCAAGCACCATTTGATTTCTTCTCCGGTGGTGGAAGCAATGACATGATAGGAGACTCTAATGGCCAGATCAGATGCTGGGAAAGGACCAATGAATCTCTTCACAAACATTGCCAACAATCTGGTTTATACCCTCATTATCCCCAACAATATTTGATGGCAATGCAACAGCTAGACAACAACACACGCAACAATTTTTACAGTTTCTTGAATTCCTCATCAGCATCAACAACCACAGGCATGGAACCATCATCATCACCATGTGTTGCAGGAATCAGAGATAAAGTGGTGAATAGTGACCCCCCAGATGGTGTTCCACCCCCATTTTTTGACTTCCTTGGAGTAGGAGCCACATGA 1389 0.4564 MPSSKCCMISSQQNQNAPTCYPFPSPPSMGMVYADMMGSLSLATVSNALSSQESYDYGHSHDHGHASGVENGRSTSWSFPFMREFLSSNFEDCSDVGAGESNSNEKTTNNGKFSEESNPNENPLSGKEVDSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRMSQSVYKRVEQNPTFVCSRDNASTTEQEPSPSYCLNLLHNGVGVTNNLASFPSFHGVGTGEVVEFGLKGSPQNMTGGRETMSNTPQVGLRAQAQQAPFDFFSGGGSNDMIGDSNGQIRCWERTNESLHKHCQQSGLYPHYPQQYLMAMQQLDNNTRNNFYSFLNSSSASTTTGMEPSSSPCVAGIRDKVVNSDPPDGVPPPFFDFLGVGAT* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01426 462 CDD SANT 193 233 IPR001005 -
Lapu2g01426 462 PANTHER MYB PROTEIN-RELATED 139 279 - -
Lapu2g01426 462 Gene3D - 192 263 - -
Lapu2g01426 462 Gene3D - 139 190 - -
Lapu2g01426 462 ProSiteProfiles Myb-like domain profile. 186 236 IPR001005 -
Lapu2g01426 462 Pfam Myb-like DNA-binding domain 139 185 IPR001005 -
Lapu2g01426 462 Pfam Myb-like DNA-binding domain 191 234 IPR001005 -
Lapu2g01426 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 185 IPR017930 -
Lapu2g01426 462 MobiDBLite consensus disorder prediction 96 130 - -
Lapu2g01426 462 FunFam MYB transcription factor 139 190 - -
Lapu2g01426 462 FunFam MYB transcription factor 192 262 - -
Lapu2g01426 462 SMART sant 190 238 IPR001005 -
Lapu2g01426 462 SMART sant 138 187 IPR001005 -
Lapu2g01426 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 240 IPR017930 -
Lapu2g01426 462 MobiDBLite consensus disorder prediction 96 127 - -
Lapu2g01426 462 SUPERFAMILY Homeodomain-like 139 232 IPR009057 -
Lapu2g01426 462 ProSiteProfiles Myb-like domain profile. 139 185 IPR001005 -
Lapu2g01426 462 CDD SANT 142 183 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01426 Lapu-Chr2 27041223 27043147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01426 84 264 MYB Transcription Factor Family AT1G69560 64.481 2.31e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu2g01426 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01426 K09422 - gmx:100776292 717.613