Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01423 ATGGATCTACAAAACATGCAAAATCGAAGCATGCATTTTGTGTTGTCAACTGATGCCAAACCAAGGCTAAAATGGACTCCTGAACTTCACCAACGGTTCATTGAGGCGACAAATCAGCTTGGAGGTGCAGATAAAGCAACTCCAAAGAGTCTTATGAGGGTGATGGGGATTCCAGGACTTACTTTGTACCACCTGAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACAACTAGATACCAGCTCTGACAGCAAACAAGAAGATTACATAGAAACCAAGAGCAGTGATGGCCATTGCAGCAGGGAAATCAGTCTTGGGGCCCAGAATCAAATTACTGAAAACATGCAGATAGCTCAGGCACTCCAAATGCAAATGGAAGTACAAAGGAAACTTTATGAACAAATTGAGGTGCAGAAACATTTGCAGCTCCGAATTGAAGCTCAAGGGAAGTATTTGCAATCAGTGCTAAAGAAGGCACAGGAAGCACTTGCTGGATACAATTCTGCCCCAGTGGGAATAGAACTCACAAAAGCTGAACTCTCTCAGCTAGTTACCATCATCAACAATGCTTGTCCGAGTTCTCCCATCTCAGAACTAACAGATACAAGAGGGTTGAGCTTAAGCAGTGGGGATAGGAAAAGAGACAGAGGCACTATGTGTTCACTGGAAAGTTCCTTAACATCTTCTGAAAGCTCTGGGAGAAAGGAAGAGAAACAGTCAATGGAAGAGATGGGGGAGTTCAAAAGCCCCAATAATGCTTCACTTGAATTGCCATTAATGAGCATTCACACTGAGAATAAAGCATCCAAGGGAGGCTCAAACAATGAGGCTAGTGGGAGAAAGAGAAGCGCAGCAACAAAATCTAATGATGGTAGGTGTGTTGTTGAACAACCATGTGGGAAAAGAAGTGGCAACAAGTTGAGGAAACCCAAGTCACCACAAATGCTTGACTTGAATAGCCAATGCCAGAGTGACATGGACTCAACAAGTTCAAAAACATTAGACTTAAATTGCAGCTTAAACTTTTGGTAA 1038 0.4268 MDLQNMQNRSMHFVLSTDAKPRLKWTPELHQRFIEATNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQQLDTSSDSKQEDYIETKSSDGHCSREISLGAQNQITENMQIAQALQMQMEVQRKLYEQIEVQKHLQLRIEAQGKYLQSVLKKAQEALAGYNSAPVGIELTKAELSQLVTIINNACPSSPISELTDTRGLSLSSGDRKRDRGTMCSLESSLTSSESSGRKEEKQSMEEMGEFKSPNNASLELPLMSIHTENKASKGGSNNEASGRKRSAATKSNDGRCVVEQPCGKRSGNKLRKPKSPQMLDLNSQCQSDMDSTSSKTLDLNCSLNFW* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01423 345 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
Lapu2g01423 345 FunFam Myb family transcription factor 19 77 - -
Lapu2g01423 345 Coils Coil 120 140 - -
Lapu2g01423 345 MobiDBLite consensus disorder prediction 268 286 - -
Lapu2g01423 345 Pfam MYB-CC type transfactor, LHEQLE motif 117 163 IPR025756 -
Lapu2g01423 345 Pfam Myb-like DNA-binding domain 22 73 IPR001005 -
Lapu2g01423 345 MobiDBLite consensus disorder prediction 197 255 - -
Lapu2g01423 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 77 IPR017930 -
Lapu2g01423 345 MobiDBLite consensus disorder prediction 232 246 - -
Lapu2g01423 345 MobiDBLite consensus disorder prediction 316 334 - -
Lapu2g01423 345 MobiDBLite consensus disorder prediction 76 97 - -
Lapu2g01423 345 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 266 IPR044848 GO:0003700
Lapu2g01423 345 MobiDBLite consensus disorder prediction 268 334 - -
Lapu2g01423 345 Gene3D - 19 77 - -
Lapu2g01423 345 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 75 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01423 Lapu-Chr2 26920685 26922883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01423 11 305 G2-like Transcription Factor Family AT1G69580 50.489 3.35e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu2g01423 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01423 - - gmx:100787178 588.571