Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01422 ATGGCTTCAGGGACTGAGGTGCCCGATACATCTGTTTTCGAGAGGTTTGAGCGAAACAGAGACATCTCTCTGTTTCTGCCGTTTCTCTTTGGCCTCTCGGAGACCACCCCCGGACGAGATAGCGACGATCCACATCATGAAAACGGGAACACTGGAGGTCCCCAACGTCAAAGAATCATCTTGGTGAACCCCTTCACTCAGGGCATGGTCGTCATCGATGCCGATTCGCGCCTCGAAGCTCTGTTTCGCGAACTTGGCAACGCAAAAGGTGGTCGACCTCCGGCTTCGAAAGAATCCATCGAGGCCATGCCGAGTGTGGAAATTAGAGAGGGGTGTGAGGATTTGGAGTGTGTGGTTTGTTTGGAGGAGTTTGGGGTTGGTGGGGTGGCTAAGGAGATGCCATGTAAGCATAAGTTTCATAGTGGTTGTATTGAGAAGTGGTTGGGGATGCACGGGTCTTGCCCTGTGTGTAGGTATGAGATGCCCGTGGAGGAGAAAAATTGGGGGAAGAAGAGGGAGGAAGAAGGGGGGGAGAGGAGAAGGGATGGTGGTGGTAGTGGTGATGAAGTTTGGGTTAGTTTTTCTTACAATAGGATTAGGAGAGGCCAGGATCATGATCAAGCTGTTTCTTCAAATGATGATTCTCCATCAAGTCATGGAGATGCTGCTGCAGAGAGTTAG 681 0.5095 MASGTEVPDTSVFERFERNRDISLFLPFLFGLSETTPGRDSDDPHHENGNTGGPQRQRIILVNPFTQGMVVIDADSRLEALFRELGNAKGGRPPASKESIEAMPSVEIREGCEDLECVVCLEEFGVGGVAKEMPCKHKFHSGCIEKWLGMHGSCPVCRYEMPVEEKNWGKKREEEGGERRRDGGGSGDEVWVSFSYNRIRRGQDHDQAVSSNDDSPSSHGDAAAES* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01422 226 MobiDBLite consensus disorder prediction 167 189 - -
Lapu2g01422 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 45 162 - -
Lapu2g01422 226 Pfam Ring finger domain 116 158 IPR001841 -
Lapu2g01422 226 SUPERFAMILY RING/U-box 111 164 - -
Lapu2g01422 226 ProSiteProfiles Zinc finger RING-type profile. 117 158 IPR001841 -
Lapu2g01422 226 MobiDBLite consensus disorder prediction 167 186 - -
Lapu2g01422 226 MobiDBLite consensus disorder prediction 36 57 - -
Lapu2g01422 226 FunFam E3 ubiquitin-protein ligase RNF181 84 164 - -
Lapu2g01422 226 SMART ring_2 117 157 IPR001841 -
Lapu2g01422 226 MobiDBLite consensus disorder prediction 202 226 - -
Lapu2g01422 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 164 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01422 Lapu-Chr2 26913133 26913813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01422 4 218 C3H Transcription Factor Family AT1G26800 51.389 1.80e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01422 - - gmx:100819587 295.434