Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01414 ATGTTGAATGTTGACGTGATTGGGAACAAAAAAAGGAAGAGGTGTGGGAGGGTTTTTAGGTTCAAGAACTTTGGTGAACCTGGTTACCCTCTTATGTTTGGTGGTCCATTTCGTGAGAATGTGAATGCATTGCTCGAATATGCAAATCTGGAGAGTCATTTAAGCATGCCAATGTGGTCTTTCCAGCTCGAAGTTCATCACCATCCACCTTTGCATATCTTGTTGTTTGTGATTGAAGAGCCAATAGAGGCAGTGCTCAATCGTCACTGCAAGCATTGTCAATACGTTGGTAATGGTCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGCCATTTGCTATGTGTCAATGGATTGGAAATGGGTTCTAATTTGGCTGGAAACCAGATCATGGACTTTTGGAACCGTTTGTGCAAAGGATTGCAAGCAAGGAAGGTGAGTTTAAACGACATTTCACAAAAGAGAGGGATGGAACTGAGACTTGTGAATGGAATAGCATATAGTGAGTCATGGTTTGGTCGTTGGGGTTACAAATTTGGTCGAGGAAGCTTTGGTGTAACTGAATCAATGTACCAAAAAGCCATAGAAGCAATAAGAAGCATGCCATTATACTTGATCATACACCACATCACCAATTCCAACCATGCCATTCCACTCATCTTCTCAAGGTATCAAACACTTTCAGATCAATCCCTTGTTACCCTTGGTGACCTTTTTAGTTACATGTTAGACCTCAAATCACGTCTTCCCCGGGAAACCTGCATTGGTTCTTATAGCACAAGTGCTTTGGTTGAGACCAATTGTCGTTGGTCCCCTAAGAGGATTGAGATGGCAACAAGGGTCATTGTTGAGGCCTTGAAAAAGACAGAGTTTAGATGGGTTTCAAGGCAAGAAGTTAGAGATGCAGCTCGTGCATACATTGGAGACACTGGTTTGCTAGATTTTGTGTTGAAGTCATTGGGAAACCATGTTGTAGGAAACTACTTGGTTCGTCGAAGCTTGAACCCTGTGACCAAAGTCTTGGAATATTGCTTGGAAGACATTTCTAAAGTTTACCAATGTAATGAAAGCTTGGTGATGAGCAACAAAGTGAAGGATAAATACAAGATCACAAGAACTCAACTGATGAAAGACATGCTTTATCTGTACAAGTACATTCTGATAGACCCTAAACCAATCATGGGATCAGAATTTCTCTCGGCTATACCATTAGCAGCTAGGATAATTCTTGACACTAAGTATTTTGTAAAAGAGTACTTTGGAGATTTTTCTTACCAAGGTTCAGCAGATAAACTCAACCTTTATTGTACTATTTTGGTGAGGAATGATGTTAATGGTGATGAGTACCTAAACAAGGTCTTTATGCCACCCCATGAATGTATCACACTCAAAAGAAGTGCTACTATCAATGACTTAAAGCTAGAGGTTGAAAGAAGCTTTAGAGAAATCTATTGGGGGCTAAGGAGTTTTGTGGTGGAATCAATTGAGAATTTGAGTGTGAATAATGGAACAGAAATGGTTTTTGGGCTAACCAAAGTGGGTGAAAAAATTGTACTTGAAGGTCGTCACACCAACATGAGACTAAACATGATTGAGCAAATATGTGAACATGATCCAAATAGTGGTGTAGTGGATTGTACTTGTGGAACTATAGAAGATGATGGTGAAAGAATGGTCTCATGTGATATTTGTGAAATTTGGCAACACACTAGATGTGTTCGAATTCCAAATGACCAAGAGATTCCTCATATTTTTCTATGCAAAAAATGTGAACAAGAAATTCTTTTGTTTCCTTCTTTGCCATAA 1809 0.3941 MLNVDVIGNKKRKRCGRVFRFKNFGEPGYPLMFGGPFRENVNALLEYANLESHLSMPMWSFQLEVHHHPPLHILLFVIEEPIEAVLNRHCKHCQYVGNGHMMHGVFHSNGFGHLLCVNGLEMGSNLAGNQIMDFWNRLCKGLQARKVSLNDISQKRGMELRLVNGIAYSESWFGRWGYKFGRGSFGVTESMYQKAIEAIRSMPLYLIIHHITNSNHAIPLIFSRYQTLSDQSLVTLGDLFSYMLDLKSRLPRETCIGSYSTSALVETNCRWSPKRIEMATRVIVEALKKTEFRWVSRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISKVYQCNESLVMSNKVKDKYKITRTQLMKDMLYLYKYILIDPKPIMGSEFLSAIPLAARIILDTKYFVKEYFGDFSYQGSADKLNLYCTILVRNDVNGDEYLNKVFMPPHECITLKRSATINDLKLEVERSFREIYWGLRSFVVESIENLSVNNGTEMVFGLTKVGEKIVLEGRHTNMRLNMIEQICEHDPNSGVVDCTCGTIEDDGERMVSCDICEIWQHTRCVRIPNDQEIPHIFLCKKCEQEILLFPSLP* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01414 602 Pfam PHD-finger 547 593 IPR019787 -
Lapu2g01414 602 CDD PHD_MMD1_like 546 591 - -
Lapu2g01414 602 SUPERFAMILY FYVE/PHD zinc finger 537 594 IPR011011 -
Lapu2g01414 602 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 100 596 - -
Lapu2g01414 602 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 540 597 IPR013083 -
Lapu2g01414 602 ProSitePatterns Zinc finger PHD-type signature. 547 591 IPR019786 -
Lapu2g01414 602 SMART PHD_3 546 592 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01414 Lapu-Chr2 26794521 26798383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01414 10 602 PHD Transcription Factor Family AT5G22260 47.898 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu2g01414 PHD 2.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01414 K26271 - gmx:100780210 1075.08