Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01411 ATGGACCTAACCAACACCGCCAACACCGCCAACACCGCCAACACCGCAGACACAGATTCTCAGGCCCCCCAACACCCCACCACCAACGGTTCTCTCAAGCGCCACCACCCCACCACCGTTCCTCCGCCGTCACAGCCACCGTCCACGGTGGTTTCCTACAAGGAGTGCCTAAAAAACCACGCTGCCTCCATAGGTGGCCACGCGCTTGATGGATGCGGTGAATTCATGCCATCCTCTTCCTCCAATCCCACAGACCCACGCTCGCTAACGTGCGCCGCGTGTGGATGCCACCGTAACTTCCACCGCCGTGACACACAGCAGTATCAAAATAATCACTCCAAACCCAATTTCATAAGCTTCTACCACTCGCCGCCGCCACCCCATCATGGCCCGGGCCTCTGCACTAGCCCAGGCCCAGGCCCGAGTCCAAGTCCAAGCCCGTTGTCAAGCCCCAGCCCACCGCCTCTCTCCCACCATTTCCCACCTTCCTCCCACCATTTCCCTGGCCCACGACCAATCCACGGGCTCTTTGGCCTGGGAAACGAGCATCACCACACGAGTTTCAATCTTTCCGAGAGCCCGAGTGGAAAGAAGAGGTTCAGGACCAGGTTCAGCCAAGAGCAGAAGGAGAAGATGCAGAAATTCTCTGAGAATTTGGGTTGGAGAATGCAGAGAGGGGATGAAGGGTTGGTGCAAGATTTCTGCAATGAGATTGGCGTTTCGAGAGGGGTCTTCAAGGTGTGGATGCACAACAATAAGAACAGTTGCAGGAAGAGATCGTTGGAGCCTGATGAAAAGATCAATGGCAATGGTTCTGATAGTCTTAATAACAATCCTTACAGCACCAACGACGATACTCTCTGA 864 0.5521 MDLTNTANTANTANTADTDSQAPQHPTTNGSLKRHHPTTVPPPSQPPSTVVSYKECLKNHAASIGGHALDGCGEFMPSSSSNPTDPRSLTCAACGCHRNFHRRDTQQYQNNHSKPNFISFYHSPPPPHHGPGLCTSPGPGPSPSPSPLSSPSPPPLSHHFPPSSHHFPGPRPIHGLFGLGNEHHHTSFNLSESPSGKKRFRTRFSQEQKEKMQKFSENLGWRMQRGDEGLVQDFCNEIGVSRGVFKVWMHNNKNSCRKRSLEPDEKINGNGSDSLNNNPYSTNDDTL* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01411 287 MobiDBLite consensus disorder prediction 109 199 - -
Lapu2g01411 287 Pfam ZF-HD protein dimerisation region 51 105 IPR006456 -
Lapu2g01411 287 SUPERFAMILY Homeodomain-like 185 258 IPR009057 -
Lapu2g01411 287 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 53 104 IPR006456 -
Lapu2g01411 287 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 24 254 - -
Lapu2g01411 287 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 53 104 IPR006456 -
Lapu2g01411 287 MobiDBLite consensus disorder prediction 267 287 - -
Lapu2g01411 287 FunFam Zinc-finger homeodomain protein 2 184 258 - -
Lapu2g01411 287 MobiDBLite consensus disorder prediction 259 287 - -
Lapu2g01411 287 MobiDBLite consensus disorder prediction 120 168 - -
Lapu2g01411 287 NCBIfam homeobox domain, ZF-HD class 197 254 IPR006455 -
Lapu2g01411 287 MobiDBLite consensus disorder prediction 1 50 - -
Lapu2g01411 287 Gene3D - 184 258 - -
Lapu2g01411 287 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01411 Lapu-Chr2 26746686 26748236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01411 51 255 ZF-HD Transcription Factor Family AT1G69600 47.826 1.10e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lapu2g01411 ZF-HD_dimer 3.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01411 - - gmx:100817446 339.347