Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01408 ATGGAAGAGATAAATAATGATGCTGAGAAACTTGATGAAGTTATGCTACCTGGGTTCAGGTTTCATCCAACTGATGAGGAGCTTGTAGGGTTTTACCTCAAGAGGAAGATCCAGCAACGCCCTTTGACTATTGAGCTCATCAAGCAGCTTGATATCTATAAATATGACCCTTGGGATCTTCCAAAGTTGGCCACCACAGGAGAGAAGGAGTGGTATTTCTATTGTCCCAGGGATAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACAGGAACTGATAGGCCTATCTACTCCTCAGAAGGTTCCAAGTGCATTGGCCTGAAGAAATCTCTGGTGTTTTACAAGGGTAGAGCTGCCAAAGGTGTTAAAACTGATTGGATGATGCATGAGTTCAGGCTACCTTCTCTCACAGACTCACTATCCCCAAAGTACGTAGACAAGGCCATTCCTGCTAATGAATCATGGGCTATCTGCAGGATATTCAAGAAAACCAATTCTACAGCTCAAAGAGCTTTATCTCACTCTTGGGTCTCTTCCCTCCCTGAAACAAGAACCTCTGATCATATCCTAACCAAACATCAAGACAACACCCAGTTTTGTTCAGACATGTCATTGACAAAGAAAACTACCTTAGCCAGCCAGTACTGTACTAACAATTACAATGATGCACAACCTTTAACCCCTAATAGTAGTAGTACTCTTTGTCCCTTAGATGTTGCCTCATACAAATCCATCATTAACCCATTGCTTTACAAAGCCTTTGATCATTTTCCCATTTCAAATGGAGACCTTAGCACGAGCTTTCTATTCCCATCTCCTTTTGAAACCTCAGATGGTAATCCTAATGCTAAATCTACAATGGACGTTTCTTCCATGTTGTTGAACATGTCATCCTCCATGGTTGGAGATTTCAATAAGACTTCAGAGGATAATACAAATACAAGTACAAGCTTTGGAGGGTTGCAAGAGCACTGTTGTGGCTACCCAATACCATTTCTACGTGAGATGCAAACCACATTTGGTGACCAACAATATGATAATATTAATGCATTGGTAAAGGGTCCTAGTGTGAATATGCCTCTTGTTGATGACCAAGAGTTAGGGTTAGAGTTGGAAACAGTACGATCCATTGGGTTTCCATTCAGTGGCATGCCATTCAATATTGGCGATGCATGGAAGTCAAATCTGCTTTGGGATACTTCATCTTTTCCTTGTGATGTCTCATCTACTTATTCCACAACTAAGTGCTATACTTAG 1284 0.4143 MEEINNDAEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLTIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSLSPKYVDKAIPANESWAICRIFKKTNSTAQRALSHSWVSSLPETRTSDHILTKHQDNTQFCSDMSLTKKTTLASQYCTNNYNDAQPLTPNSSSTLCPLDVASYKSIINPLLYKAFDHFPISNGDLSTSFLFPSPFETSDGNPNAKSTMDVSSMLLNMSSSMVGDFNKTSEDNTNTSTSFGGLQEHCCGYPIPFLREMQTTFGDQQYDNINALVKGPSVNMPLVDDQELGLELETVRSIGFPFSGMPFNIGDAWKSNLLWDTSSFPCDVSSTYSTTKCYT* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01408 427 FunFam NAC domain-containing protein 35 24 175 - -
Lapu2g01408 427 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Lapu2g01408 427 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 230 - -
Lapu2g01408 427 Gene3D NAC domain 24 177 IPR036093 GO:0003677|GO:0006355
Lapu2g01408 427 SUPERFAMILY NAC domain 14 172 IPR036093 GO:0003677|GO:0006355
Lapu2g01408 427 ProSiteProfiles NAC domain profile. 15 172 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01408 Lapu-Chr2 26699432 26700914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01408 1 313 NAC Transcription Factor Family AT1G26870 56.839 5.76e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu2g01408 NAM 7.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01408 - - gmx:100783995 701.819