Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu2g01391 | ATGTTGATACGAGGATTCAGTTTTTGGATCAAAGGATGCACTTTGTTGGCCTTAATATCTGCAATTTTCGCTCTGGAACCCGAACTGGGATCGACTCGCGTCGTCTTTCAGACAAAGTATGGGGATATTGAATTTGGTTTCTTTCCAACTGTTGCACCCAAAACTGTTGACCACATTTTTAAGCTCGTGCGACTTGGAGGCTATAACACTAACCACTTCTTTCGGGTGGATAAGGGATTTGTGGCTCAAGTAGCAGATGTTGCGAATGGAAGATCGGCTCCCATGAATGAGGTTCAGAAAAGAGAGGCTGAAAAGACTGTTGTTGGTGAATTTAGTGACGTCAAACATGTTCGTGGTATTCTTTCCATGGGAAGGTACGATGATCCAGACAGCGGTTCATCCTCATTTTCAATTCTACTTGGAGATTCTCCTCATCTTGATGGAAAGTATGCAATATTTGGAAAAGTTACTAAAGGTGATGAAACATTGACAAAGCTCGAGCAACTTCCTACCCGTAAAGAGGGTATATTTGTAATGCCAATGGAACGCATCACTATCTTGTCATCATATTACTATGACACAGAGACAGAAAATTGTGAGCAAGACAGATCAATTTTGAAGCTCAGACTAGCCGCCTCAGCTGTTGAAGTTGAAAAACAGAGGATGAAGTGCTTCCCCTGA | 681 | 0.4214 | MLIRGFSFWIKGCTLLALISAIFALEPELGSTRVVFQTKYGDIEFGFFPTVAPKTVDHIFKLVRLGGYNTNHFFRVDKGFVAQVADVANGRSAPMNEVQKREAEKTVVGEFSDVKHVRGILSMGRYDDPDSGSSSFSILLGDSPHLDGKYAIFGKVTKGDETLTKLEQLPTRKEGIFVMPMERITILSSYYYDTETENCEQDRSILKLRLAASAVEVEKQRMKCFP* | 227 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu2g01391 | 226 | Gene3D | - | 24 | 198 | IPR029000 | - | |
| Lapu2g01391 | 226 | CDD | cyclophilin | 35 | 188 | - | - | |
| Lapu2g01391 | 226 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 34 | 187 | IPR002130 | GO:0000413|GO:0003755 | |
| Lapu2g01391 | 226 | SUPERFAMILY | Cyclophilin-like | 30 | 193 | IPR029000 | - | |
| Lapu2g01391 | 226 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 41 | 191 | IPR002130 | GO:0000413|GO:0003755 | |
| Lapu2g01391 | 226 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 | 15 | 226 | IPR044233 | - | |
| Lapu2g01391 | 226 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 119 | 134 | IPR002130 | GO:0000413|GO:0003755 | |
| Lapu2g01391 | 226 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 148 | 163 | IPR002130 | GO:0000413|GO:0003755 | |
| Lapu2g01391 | 226 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 73 | 85 | IPR002130 | GO:0000413|GO:0003755 | |
| Lapu2g01391 | 226 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 47 | 62 | IPR002130 | GO:0000413|GO:0003755 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu2g01391 | 34 | 189 | U-box Gene Family | AT5G67530 | 27.044 | 3.34e-10 | 57.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu2g01391 | - | - | gmx:100819238 | 417.927 |