Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01386 ATGTGGTGCAAAACCTGCAATGAGATGGCTTTCTTCCCAGCAAATTTCATGCTTCAAACTCCTCACCATGATGATCATCAACCTCCACCTTCGCTCACGTCAATTCTACCCGCGTGTACACCTCAAGAATATCATGGGGGAGTGACCTTTCTAGGAAAGAGATCCATGTCATTTTCATCAGGAATTGAGCACGGAGAAGAAGCCAATGCTGAGGAAGATTTGTCTGATGATGGATCACAGGCAGGGGAGAAGAAGAGGAGGCTTAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAACTTGCAAGAGCTCTTGGCTTGCAGCCAAGACAAATTGCCATATGGTTCCAGAACAGGAGGGCTAGGTGGAAGACCAAGCAGTTGGAGAAAGACTACGATCTCCTCAAAAGACAGTATGAAGCCGTCAAGTCAGATAATGATGCACTTCAAACTCAGAACCAAAAACTTCAGGCTGAGGCTATTTTTCTGGTGCAGATATTGGCACTGAAAAGTAGAGAGCCAACTGAATCTATCAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAATAGAAGCGAGAACAGCTCAGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCTATCCACACATCAGCCGAGCAGACCCCTCTTTCCATCTTCTGCTAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACTTCTTCAAGACCTGACCTTCCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCCTAAGCAACATGTTCTGTGGCATGGATGATCAATCCGGGTTTTGGCCATGGTTGGAGCAGCAGCATTTCAATTGA 882 0.458 MWCKTCNEMAFFPANFMLQTPHHDDHQPPPSLTSILPACTPQEYHGGVTFLGKRSMSFSSGIEHGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKSDNDALQTQNQKLQAEAIFLVQILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLSTHQPSRPLFPSSARPAGVAQLFQTSSRPDLPCQKIDQMVKEESLSNMFCGMDDQSGFWPWLEQQHFN* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01386 293 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Lapu2g01386 293 CDD homeodomain 84 140 IPR001356 GO:0003677
Lapu2g01386 293 Coils Coil 131 172 - -
Lapu2g01386 293 SMART HOX_1 82 143 IPR001356 GO:0003677
Lapu2g01386 293 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 63 221 IPR045224 GO:0003700
Lapu2g01386 293 Pfam Homeobox associated leucine zipper 139 173 IPR003106 GO:0006355|GO:0043565
Lapu2g01386 293 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
Lapu2g01386 293 Pfam Homeodomain 84 137 IPR001356 GO:0003677
Lapu2g01386 293 MobiDBLite consensus disorder prediction 62 90 - -
Lapu2g01386 293 Gene3D - 76 145 - -
Lapu2g01386 293 SUPERFAMILY Homeodomain-like 75 141 IPR009057 -
Lapu2g01386 293 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677
Lapu2g01386 293 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677
Lapu2g01386 293 FunFam Homeobox-leucine zipper protein ATHB-13 76 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01386 Lapu-Chr2 26066365 26069099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01386 5 293 Homeobox Transcription Factor Family AT1G69780 63.072 4.19e-120 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu2g01386 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01386 K09338 - gmx:100808033 526.168