Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01367 ATGCTGGAGGCTCTTGATCGATCGGCTAAAACGATGAAGAAATTGAAGCAGAAGCGAAATCCATTTCATGACTCCAAAATGACAAGGAAACTGCGCATCATTTGTGATGATCCTGATGCTACCGACTCATCATCGGATGAAGAGGAGCATTTTGGGAATGGTACGAGGACGAAGAGAACTATGGTTGAGATTGCTCTTCCACCTGTTCCTGTTAACTCTGTCATTGCTGCTGCTGAAACTAGTACCGAGAGTTCAAACAACGAGGAACTGAACAAGAAGAGGGTTTTGGCCAAAACTCCCTCAGCGAAGAGGCAATCTTGTGGGAAATACAAAGGTGTTCGGATGAGGAAATGGGGCAAATGGGCTGCAGAGATTCGCGACCCTTTCAAGGGTGCGCGTGTCTGGTTGGGCACTTACAACACTGCAGAAGAGGCTTCTCTGGCATACGAGACCAAAAGACTTGAATTTGAAGCCATGGCCAAGGCTTTGTCTGATGAGAGGAGCAACAACACCACCACCATCCACAACAACAACATCAACAACACAGACAGCAACAACAACGTTGTTGCTTCTGTTGTAACTGTGGCTGCGTCAGAAAAGAACAACTCCAACTACTGCGTTTCTTCTGTTGCAGATTCTGTATCAGACTCCAAGTCTGCTACTATTGACTACTCAGAGAGTAGTATCCTGTCACACACATCACCATATTCTGTGCTTGAGTTGGATACCTCTGCTTCTAATTTGAGTGAGAGTGGTAAGGTTTCAGGCAATGAAGTTGTTGAGACTGAGACTGAAGGTTTGAAAGCTGAAGTCTTTGAAGATGAAGGTGTGGTCACTGAATTTGCTGAGCTAGATATTCCGGATTTGAGTATGCTGACAGTGCCGCCCCCATCTGCTGCTGCTCCATCTCAGTTTGAATTTGATTGGTTGGCATTAGACAATCTGGAGCATGGATTTGATGAAGATCTTGGCTTTGATGATGATCTTGCTGCCCTGGAAGACATTCAGATTTGTGGCTTTGATGACAGTCAGCCTAGTGAGCTTCCTGATTTTGATTTTGAAGACTTTGGTGCTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAACATACCTTGCGTATAA 1125 0.4524 MLEALDRSAKTMKKLKQKRNPFHDSKMTRKLRIICDDPDATDSSSDEEEHFGNGTRTKRTMVEIALPPVPVNSVIAAAETSTESSNNEELNKKRVLAKTPSAKRQSCGKYKGVRMRKWGKWAAEIRDPFKGARVWLGTYNTAEEASLAYETKRLEFEAMAKALSDERSNNTTTIHNNNINNTDSNNNVVASVVTVAASEKNNSNYCVSSVADSVSDSKSATIDYSESSILSHTSPYSVLELDTSASNLSESGKVSGNEVVETETEGLKAEVFEDEGVVTEFAELDIPDLSMLTVPPPSAAAPSQFEFDWLALDNLEHGFDEDLGFDDDLAALEDIQICGFDDSQPSELPDFDFEDFGADEFAGWIEEPLNIPCV* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01367 374 SUPERFAMILY DNA-binding domain 109 156 IPR016177 GO:0003677
Lapu2g01367 374 CDD AP2 109 149 IPR001471 GO:0003700|GO:0006355
Lapu2g01367 374 SMART rav1_2 109 163 IPR001471 GO:0003700|GO:0006355
Lapu2g01367 374 Gene3D AP2/ERF domain 108 164 IPR036955 GO:0003700|GO:0006355
Lapu2g01367 374 MobiDBLite consensus disorder prediction 1 27 - -
Lapu2g01367 374 PIRSF PTI6 238 366 IPR017392 GO:0003700
Lapu2g01367 374 PIRSF PTI6 5 234 IPR017392 GO:0003700
Lapu2g01367 374 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Lapu2g01367 374 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Lapu2g01367 374 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Lapu2g01367 374 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Lapu2g01367 374 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01367 Lapu-Chr2 25608167 25610505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01367 11 373 AP2-EREBP Transcription Factor Family AT1G68550 32.718 1.18e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lapu2g01367 AP2 3.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01367 - - var:108335041 559.681