Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01363 ATGTCTTCCACTAAGAACAAGGGAAACGCTCTTGGCGCCAGAACGGCACGAGCTTGCGATAGCTGCATAAGAAATCGAGCGCGTTGGTACTGTGCCGCGGACGATGCGTTCCTCTGCCGAGCTTGTGACTTTTCCGTTCACTCGGCAAACCCATTAGCGCGTAGACACCACCGTGTTCGCTTGAAAATCGTTTCATACATTAACGGCAACAATAATTCGTCTTCTGGAATGAGTAATATTCGAGCTCCATCATGGTACAAAGGCTTCACCAAGAAACCCCGAACGCCACGTCACGGGAAGCACGCTAATAAGGATCTGAAGAGCCCCTTTGGTACAGTACCGGATGTGTGTCCCGAAGACACAAATTCGAATTCCCATGAAGAGAGCATGGATCAGCTTCTTTATAGAGTGCCCGCAACTCCTTCATTCGGGCAAGGGATATCCGTGACCGATGAGAAGAAAATTGATTTGTTAGGATGTGAAAGCGCGTTTGAGAATGCGGAGTTTAGTGCTGATGTTGAGAGTTTGTTGAGAGAGGGGCTAGAGAGTGAGTGCGTGGGAATGGAAGAGTTGGGGCTGGTGGGTACGAAGGAGGTGGAGGAGCATGGTTCGTGGGAGTGTTGTGTGGATGGTGGGAGTGTGAAGGTGAAGGAGGATGGTTGTGGCGATGAGTTGAATTTTGCTTTGACATGTGAAGAGGTGAAGGAGAAGGTTATTGGGTTGGATGAGAGGCAACAATTAGTGAAAGAAAATGATCAACGAAAGAAGAAGAAGATACTATTGTTGCAGTTAGATTATGAGGCTGTAATCACTGCTTGGACGAGCCAAAAATCTCTGTGGATTACTGCTGATAAACCAGACTTGGGCACTCAGCAGTGCTGGCCTTATTGCATGGGAAAATGTGGAGTGGAGTTTAACCATCCTTGTGGTGAATTGGGTGAGTTATTTGGTTGTCATTCAGCAATGGCAAACGGGGGAAGAGAAGCAAGAGTATCAAGATATAGAGAAAAGCGACGTAAAAGGTTGTTCTCGAAGAAAATAAGGTACGAGGTTCGAAAATTGAATGCGGAGAAAAGACCCAGAATGAAAGGGAGGTTTGTAAAGAGGCCTTCTTTAGCGACACCACCCACTTTTTCTTTGCTAAACAAAAAAGAAGAGAGGGTGTAA 1167 0.4653 MSSTKNKGNALGARTARACDSCIRNRARWYCAADDAFLCRACDFSVHSANPLARRHHRVRLKIVSYINGNNNSSSGMSNIRAPSWYKGFTKKPRTPRHGKHANKDLKSPFGTVPDVCPEDTNSNSHEESMDQLLYRVPATPSFGQGISVTDEKKIDLLGCESAFENAEFSADVESLLREGLESECVGMEELGLVGTKEVEEHGSWECCVDGGSVKVKEDGCGDELNFALTCEEVKEKVIGLDERQQLVKENDQRKKKKILLLQLDYEAVITAWTSQKSLWITADKPDLGTQQCWPYCMGKCGVEFNHPCGELGELFGCHSAMANGGREARVSRYREKRRKRLFSKKIRYEVRKLNAEKRPRMKGRFVKRPSLATPPTFSLLNKKEERV* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01363 388 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Lapu2g01363 388 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 4 371 - -
Lapu2g01363 388 MobiDBLite consensus disorder prediction 364 388 - -
Lapu2g01363 388 Pfam CCT motif 327 369 IPR010402 GO:0005515
Lapu2g01363 388 SMART bboxneu5 14 61 IPR000315 GO:0008270
Lapu2g01363 388 CDD Bbox1_BBX-like 18 61 - -
Lapu2g01363 388 ProSiteProfiles CCT domain profile. 327 369 IPR010402 GO:0005515
Lapu2g01363 388 Pfam B-box zinc finger 16 58 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01363 Lapu-Chr2 25494786 25496965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01363 5 369 C2C2-CO-like Transcription Factor Family AT1G25440 41.990 1.32e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lapu2g01363 CCT 1.8e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01363 - - vun:114173052 593.964