Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01342 ATGGGTTGCTACCTTTCTTGTTTTAAGCGGAGACAAGATGAAAGTGACGAAGAGAGTGATGATAATACAGAAGATGACACTTCTCCACTTCTCTGTCATAGAGCAAATAACGTGAATGAAAATCCAGAGGCACCAGCGGCGGAGGGTGACGGAGCTGCATCAACCACCAGTCCGAATAAAGTGGCACCTGCGGCGGAGGGTGACGGAGCTGCATCAACCACCACTCCGAACCCTTCAGAATCCACCCATACTAAATCCTCCGACGAGGATGTCTGTCCTACTTGTTTTGAAGAATATAGCGAAGAAAATCCGAAGATTATAGCAAAGTGCAAGCATCATTATCACCTTGCCTGCATATATGAGTGGAAGGAGAGAAGTGAAACCTGTCCAACTTGTAGGCGGTTACATAACACTGACAATGTTATGCACTCCTTTGGTTTGCAGGTGATTGATTTTGGTGAAGCATAG 468 0.4594 MGCYLSCFKRRQDESDEESDDNTEDDTSPLLCHRANNVNENPEAPAAEGDGAASTTSPNKVAPAAEGDGAASTTTPNPSESTHTKSSDEDVCPTCFEEYSEENPKIIAKCKHHYHLACIYEWKERSETCPTCRRLHNTDNVMHSFGLQVIDFGEA* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01342 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 139 IPR013083 -
Lapu2g01342 155 MobiDBLite consensus disorder prediction 1 90 - -
Lapu2g01342 155 ProSiteProfiles Zinc finger RING-type profile. 92 133 IPR001841 -
Lapu2g01342 155 Pfam RING-H2 zinc finger domain 87 133 IPR024766 GO:0008270
Lapu2g01342 155 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 46 134 - -
Lapu2g01342 155 SMART ring_2 92 132 IPR001841 -
Lapu2g01342 155 SUPERFAMILY RING/U-box 86 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01342 Lapu-Chr2 24979058 24981325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01342 79 135 C3H Transcription Factor Family AT3G02290 64.912 9.59e-24 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01342 - - pvu:PHAVU_003G039100g 118.242