Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01337 ATGGAATCTTGGAGTTATGTTCCTGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGACTTCTCACTTGATGCTTTTTTGAGAAGTCGAAAAACATTGGTTGAATGGGACAACAAATCCAACTTCGAGAGAGACGGATTTAATTCAGACAGGGAGGTTGTTAAAAGCATGGAATTTGTGGACTTGGGATTCCCTGACATGTTACAGAAGTCTTTTCATGGTAGTCAGCCTCTAGAGACATCAAGCTATGAACTAGATAGTAATTCTAGTAAAAGAGGGAATTCCTCCACACATGTCATTGCTTTGGATTCTTCTGTGGGGGAAGAAGAATCTGATTCAAGGCATTTAAGTTCTCTAGTCGAAGCGAAGACTCATGATTCTTCACTGATTGATCTCAAGCTAGGAAGATTAGCAGATTGTAAAGGTTCATCAAGTGATAAAGTTGCAAAAGAAGGGTTTACTCTGACATCTATACATCCAACCACGCTTTCCAAGAGAGCTCGCACTTCCAGCTTATCTGCACAGGCTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGATTACCACAAAAGGCATAAAGTTTGTGATGCTCACTCCAAAACAGCCAAAGTTATTGTAAATGGACTTGAACAAAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTAGCTGAGTTCGATGATGGCAAGCGCAGTTGTCGTAGGCGCCTAGCAGGACACAATGAACGTAGGAGGAAACCTCAATTTGATTACATGACTGGTAAACAGCACAAGATTCTTCAATCATATCAAGGTACCAAGTATCTTGGGTCCTCATTACAGAACAAACCCCAGTTTCCCTTTCAAGACATATTTCAAAGTGGCATCCTTTTCCCTGGAAAGCATGCTCAGAACTCTCAGAGTGGACGCATCAAACTGGAAGAGGATTCCTTGTACAGTTCCCAACGTGCTGCACCCGTCACACTTGGTCAGGAATTATCAAGCTGTGCTCTCTCTCTTCTGTCAGATCAGTCACAGTATCCATCACGTCATGCAGCAGGAAATCCATTAGCCAGCTCCCGAATCCTTCACGGCAACCACATGCCAGACAGAGATGACATAATTTCCGAAACATCTTTGAGGATAACAAGTTCTGCTGATAAATTTGCACCAAATGAGTCCTTTCCATGCAACACAGGCTCTAAGGAAGTTATTAAGAATCTATCCACACCATTCTCTAACGCTGGTCATGCTCTTCAAGATCATCATGGAGATGATATTTGCCAACCATCAGACTTGTTCGATGTCAAACACCGTCTTTCCTCAGAACATGGAGCTACAGTTGATCTGTTCCAGTTGTCCTCACATCTTCAGAGGGTGGAGCAACAAAGAAATTCTGTTTTGGTGAAGTGGGAAAATGAGGAGTACTGTTTCCCAACTGTTTGA 1443 0.4234 MESWSYVPEEKGYLFSDEMDFSLDAFLRSRKTLVEWDNKSNFERDGFNSDREVVKSMEFVDLGFPDMLQKSFHGSQPLETSSYELDSNSSKRGNSSTHVIALDSSVGEEESDSRHLSSLVEAKTHDSSLIDLKLGRLADCKGSSSDKVAKEGFTLTSIHPTTLSKRARTSSLSAQAPVCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGLEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTGKQHKILQSYQGTKYLGSSLQNKPQFPFQDIFQSGILFPGKHAQNSQSGRIKLEEDSLYSSQRAAPVTLGQELSSCALSLLSDQSQYPSRHAAGNPLASSRILHGNHMPDRDDIISETSLRITSSADKFAPNESFPCNTGSKEVIKNLSTPFSNAGHALQDHHGDDICQPSDLFDVKHRLSSEHGATVDLFQLSSHLQRVEQQRNSVLVKWENEEYCFPTV* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01337 480 FunFam Squamosa promoter-binding-like protein 14 170 240 - -
Lapu2g01337 480 ProSiteProfiles Zinc finger SBP-type profile. 176 253 IPR004333 GO:0003677
Lapu2g01337 480 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 99 465 IPR044817 GO:0003677
Lapu2g01337 480 Gene3D - 169 240 IPR036893 GO:0003677|GO:0005634
Lapu2g01337 480 SUPERFAMILY SBT domain 177 258 IPR036893 GO:0003677|GO:0005634
Lapu2g01337 480 Pfam SBP domain 179 252 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01337 Lapu-Chr2 24735668 24741506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01337 93 478 SBP-box Gene Family AT1G69170 39.225 5.03e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu2g01337 SBP 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01337 - - vum:124825483 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01337 2 24735668 24741506 Lapu2g01337 2 24735668 24741506 ECH