Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01335 ATGAACCACGACGACAAACTCACCATGGACCTGGTTCCACCATCTGAACACCTCTGCTACGTTCGTTGCAACTTCTGCAACACTGTCCTCGCGGTTGGTATCCCATGCAAGAGGCTGTTGGACACTGTGACAGTGAAGTGTGGCCACTGCAGCAACCTCTCCTTTCTGAGCACCAGACCCCCAAATTCTCAAAACCAAAGCATTGATCACACCCTCAGTCTCCAGCAGGGGTTTTACAGTAATGCCAAAAAGGGACAAGCATCGTCTTCATCCTCCTCACCAACCACATCCAACGAGTCAGTGTCCCCAAAAGCAGCATCATTTGTTGTGAAACCACCTGAGAAAAAGCACCGTCTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATACAGCGCATCAAAGCAGCGAACCCTGAGATCCCACATCGAGAAGCTTTCAGCGCTGCTGCGAAAAATTGGGCAAGGTTCATTCCAAATTCACCAACCAGTTCAGTTTCTGCAAGTAAAGTTAATGTAAGAATTCCTTATCCTTGTATATTACTAAAGTTTAATCATTTATATCTTTGGATTCTTGTATTTTAA 585 0.4547 MNHDDKLTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQNQSIDHTLSLQQGFYSNAKKGQASSSSSSPTTSNESVSPKAASFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARFIPNSPTSSVSASKVNVRIPYPCILLKFNHLYLWILVF* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01335 194 MobiDBLite consensus disorder prediction 83 104 - -
Lapu2g01335 194 FunFam Protein CRABS CLAW 90 161 - -
Lapu2g01335 194 MobiDBLite consensus disorder prediction 83 113 - -
Lapu2g01335 194 CDD HMG-box_SF 118 154 - -
Lapu2g01335 194 PANTHER PROTEIN YABBY 6-RELATED 14 164 IPR006780 GO:0007275
Lapu2g01335 194 Gene3D High mobility group box domain 93 161 IPR036910 -
Lapu2g01335 194 SUPERFAMILY HMG-box 101 155 IPR036910 -
Lapu2g01335 194 Pfam YABBY protein 14 157 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01335 Lapu-Chr2 24690130 24692004 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01335 1 169 C2C2-YABBY Transcription Factor Family AT1G69180 63.372 8.71e-66 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lapu2g01335 YABBY 9.8e-57 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01335 K25796 - gmx:100819079 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01335 2 24690130 24692004 Lapu2g01335 2 24690130 24692004 ECH