Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01327 ATGGCGATGACGCAAGGGGTGCAGAAGAACACGCTGTACGTGGGAGGGTTAGCGGAGGAGGTCAACGAGTCCATCCTCCACGCCGCCTTCATCCCCTTCGGCGACATCAAGGACGTCAAGACGCCACTCGACCAGGCCACGCAGAAGCACCGCTCATTTGGCTTCGTCACCTTCCTCGAACGCGAAGACGCCTCCGCCGCCATGGACAACATGGACGGTGCCGAGCTCTACGGCCGCGTCCTCACCGTCAACTACGCCCTCCCCGAACGCATTAAAGGCGGTGAACAGGGCTGGGCCGCCCAACCTATTTGGGCGGATGCCGATACCTGGTTTGAGCGCCAGCAGCAGGAGGAGGAGATGCGGCGTATTGAGGCCGAGAATCGCGCGGCGATGCAGGCGGCGGAGGACTTGCACCGGAAACAAGTGGCGGAACAGCGAGAGGGAGAGAAGGAAGAGGAAATTGAGATCAAGGATGATCCTATGGCCAAGGCTGAAGCTGAGGTTCTACAACAATAG 516 0.6027 MAMTQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIEAENRAAMQAAEDLHRKQVAEQREGEKEEEIEIKDDPMAKAEAEVLQQ* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01327 171 PANTHER ATPASE E1 2 171 - -
Lapu2g01327 171 Gene3D - 2 153 IPR012677 -
Lapu2g01327 171 MobiDBLite consensus disorder prediction 132 164 - -
Lapu2g01327 171 FunFam Peptidyl-prolyl cis-trans isomerase 2 155 - -
Lapu2g01327 171 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Lapu2g01327 171 CDD RRM_PPIE 12 86 IPR034168 GO:0003723
Lapu2g01327 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Lapu2g01327 171 SMART rrm1_1 11 84 IPR000504 GO:0003723
Lapu2g01327 171 MobiDBLite consensus disorder prediction 132 171 - -
Lapu2g01327 171 Coils Coil 113 140 - -
Lapu2g01327 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01327 Lapu-Chr2 24360750 24361396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01327 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 2.58e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01327 - - gmx:100809447 308.916