Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01316 ATGTGTACCAGCAATAACAGTGACAACAACTGTCACTGGAGGGCCGAGGAATCCATTGGTGGCAACGCGGAAGCTCTTCAGGCCCTTAGAGAACTCATCATATTCCCTCTTCACTTCTCTCACGAGGCACAGAAGCTAGGCCTTAAGTGGTCCAGAGGATTGCTGCTGCACGGTCCACCAGGCACTGGAAAGACAAGTTTGGTACGAGCAGTTGTTCGGGAGTGTGGGGCACAGTTGACAATTATCAGTCCACACTCTGTTCGTAGAGCACATGCTGGTGAAAGTGAGAGAATTCTCCGTGATGCTTTTTCAGAGGCATCATCTCATGTAGCTCAGGGCAAGCCATCGGTTATCTTTATAGATGAAATAGATGCGCTCTGTGCTCGCCGAGATTCCAAAAGGGAGCAAGATGTTCGAGTTGCCTCTCAACTATTTACTTTGATGGACTCAAATAAACCAACCTTTTCTACACCAGGTGTAGTTGTGGTTGCATCAACTAACAGATTGGATGCAATTGATCCTGCACTAAGAAGGTCTGGACGTTTTGATGCTGAAATCGAAGTTACTGTCCCAAATGAAGAGGACCGCTATCAAATTCTGAAGGTGTATACAAAGACAATTCCCTTGGATCCCAGTATTGACTTAAAGTCTATTGCTGCATTGTGCAATGGTTATGTTGGAGCTGATTTGGAGGCTTTGTGTCGAGAAGCTACCATGTTTGCTATTAAAAGATTCTCAAATACAAAAGATGCTAATAATTTCAGTCTAACATTGGAAGATTGGAAGAATGCAAGGTCTGTTGTTGGTCCAAGTATAACAAGAGGGGTTACTGTGGAAATTCCCAAGGTGACTTGGGAAGACATCGGTGGATTAAAAGAATTAAAGAAAAAACTCCAGCAAGCTGTCGAATGGCCTATTAAGCATTCTGCTGCATTTTCAAGATTAGGAATATCCCCTGTACGTGGAATTCTTCTCCATGGGCCTCCAGGATGTTCCAAAACTACCCTTGCCAAAGCAGCTGCACATGCTGCCCAAGCATCTTTCTTTTCCTTGAGTGGTGCAGAATTGTATTCGATGTATGTTGGAGAGGGGGAAGCTTTGCTTCGTAAAACATTTCAAAGAGCACGCCTTGCAGCACCGAGTATAATATTCTTTGATGAGGCTGATGTGGTAGCTGCCAAACGGGGTGACAGTTCAAGCAATAGTGCTACAGTTGGAGAGAGACTTTTATCCACTCTGCTGACTGAGATTGATGGCTTAGAAGAAGCAAAAGGAATTCTTGTTTTGGCAGCTACAAATCGCCCCTTTGCAATTGATGCTGCACTTATGCGTCCCGGGCGTTTTGATCAGGTTCTGTATGTACCGCCTCCTGATTTAGAGGCTCGATACGAGATACTTTGTGTTCATACGCGGAAGATGAAGACAGGGCATGATGTTGACCTCAGAAGGCTAGCAGAAGACACAGAGCTGTTCACAGGTGCTGAACTGGAAGGATTATGCAAGGAAGCTGGAATTGTAGCTCTAAGGCAAGACATATCTGCTGCCGTTGTATTTGACCGCCATTTCCAGATTGCAAAGAGTTCTTTAAAACCAGCTTTGACAAAAGAAGAAATAGACTCGTACTCATCTTTCATGAAGACCTCATCTCGAGCTTTGCCTAGCCACTCTAAAGCAGGATTCGAAGCAGACAAGGGCGAAAGGAACAGGTTGAATTCTTTTTCTTTGGTAAAAGTTGGTGTTGTCAGCTGTTTGTTAGTGGCTGCTGCTGCTGCTGAATACTATATCATGTATGGAGATCAAAGTGTACGTAACATAGCTACCTGA 1824 0.4446 MCTSNNSDNNCHWRAEESIGGNAEALQALRELIIFPLHFSHEAQKLGLKWSRGLLLHGPPGTGKTSLVRAVVRECGAQLTIISPHSVRRAHAGESERILRDAFSEASSHVAQGKPSVIFIDEIDALCARRDSKREQDVRVASQLFTLMDSNKPTFSTPGVVVVASTNRLDAIDPALRRSGRFDAEIEVTVPNEEDRYQILKVYTKTIPLDPSIDLKSIAALCNGYVGADLEALCREATMFAIKRFSNTKDANNFSLTLEDWKNARSVVGPSITRGVTVEIPKVTWEDIGGLKELKKKLQQAVEWPIKHSAAFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRKTFQRARLAAPSIIFFDEADVVAAKRGDSSSNSATVGERLLSTLLTEIDGLEEAKGILVLAATNRPFAIDAALMRPGRFDQVLYVPPPDLEARYEILCVHTRKMKTGHDVDLRRLAEDTELFTGAELEGLCKEAGIVALRQDISAAVVFDRHFQIAKSSLKPALTKEEIDSYSSFMKTSSRALPSHSKAGFEADKGERNRLNSFSLVKVGVVSCLLVAAAAAEYYIMYGDQSVRNIAT* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01316 607 PANTHER AAA-FAMILY ATPASE 15 548 - -
Lapu2g01316 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 542 IPR027417 -
Lapu2g01316 607 CDD RecA-like_CDC48_r2-like 294 454 - -
Lapu2g01316 607 Gene3D - 191 272 - -
Lapu2g01316 607 FunFam spermatogenesis-associated protein 5-like protein 1 457 543 - -
Lapu2g01316 607 FunFam Cell division control protein 48 homolog B 11 189 - -
Lapu2g01316 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 271 IPR027417 -
Lapu2g01316 607 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 58 77 - -
Lapu2g01316 607 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 404 423 - -
Lapu2g01316 607 CDD RecA-like_CDC48_NLV2_r1-like 18 188 - -
Lapu2g01316 607 Pfam ATPase family associated with various cellular activities (AAA) 54 188 IPR003959 GO:0005524|GO:0016887
Lapu2g01316 607 Pfam ATPase family associated with various cellular activities (AAA) 323 455 IPR003959 GO:0005524|GO:0016887
Lapu2g01316 607 ProSitePatterns AAA-protein family signature. 426 444 IPR003960 GO:0005524|GO:0016887
Lapu2g01316 607 SMART AAA_5 50 192 IPR003593 GO:0016887
Lapu2g01316 607 SMART AAA_5 319 458 IPR003593 GO:0016887
Lapu2g01316 607 Gene3D - 273 457 IPR027417 -
Lapu2g01316 607 Gene3D - 8 189 IPR027417 -
Lapu2g01316 607 Pfam AAA+ lid domain 478 522 IPR041569 -
Lapu2g01316 607 Pfam AAA+ lid domain 212 254 IPR041569 -
Lapu2g01316 607 Gene3D - 458 549 - -
Lapu2g01316 607 FunFam Cell division control protein 48-B-like protein 273 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01316 Lapu-Chr2 24116869 24127934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01316 252 550 Calmodulin-binding Proteins AT3G56690 45.485 4.30e-82 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01316 - - vra:106755317 1053.89