Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01299 ATGATGTCGTATCAATCAATGGAGGAGAGAAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTCCCCTGTGGGAAGTCTCTTGGTGGCCACATCAGGACTCACATGATGAATGAGAATTCAGCTTTAGGTAATGCAGAGAGGAACAATGCTACTAATGCTATGTTCAAGTTGAATGGCGGGGGAAAGAGGAAGAGGGATTTGGGGTCTGAAGAAAATGGTGGTGGTGCTAGTAGGGGGAACTATAACGTCATTTATGGTCTTAGAGAGAACCCCAAGAAGACCACGAGGTTTGTGCATTCCAATTCCACTATGCAACTCGAGAAGTTCTGCAAAGAATGTGGGAAGGGATTTCTATCATTGAAGGCTCTTTGTGGCCACATGGCTTGTCACTCTGAAAAGGACAAGGGAGCCAACAGGTTTGACAGCAGTTCTAGTGGGTTTGCTGAGAAGCAGAAATTGGTTATGGATAGTCAATCTGACACCGAAACTTCTACGCCAAGGAGGTCTAAGAGAGCGAGGTTCAAGACCCTTAGCAGTAGCAACAACCAAGGTCAATCTTCTGTTTCGGAGGTTGAGCAGGGTCAAGAAGAGGTGGCTAGGTGTTTGATGATGTTGTCCAAGGATTCAAGCTATAAGGGTCGTTTTGCTTTGTTCACGGAGTCTTCTGATAACAACTCGGCTGTTCTAGAAGCAAAGTCACCTTCTCCGGAAACCAAGGTTACTACGATGAATAGTAATGGTAAGAATTTGATGTCTAGTGCTTATGTGGGGAAGAAGTTGGAGCAGCGCAAGGACTTGAAGTTTAAGTCTGCTCAAGTTGGCTATGATTCTGATAATTCAGATTCTGGGTATTTTAGATATGGTCCTAAGGAGGTTGACTCGACTGATTCAAACAATGGGAATGAGGTTAAGTCTTCGAAAGTGGGGTACTTATCTGGGTTTGAGGATTATGATGTTGAGTCGAGGAAAATGCTAAGCAGGGGAAGAAGCAGGAACACTGAATTTAAGAAATTTGTTTTGGAGGATTGGGAGAATGATAGACAAGATGGTGGAGCTGCAAGGAAATTTGATTCAAAGAAATTTAAGAAATCCAATTATGATTCTCTTGGCCAAAATTTAGGTGGGGTTTCTAGCAGGAAGATGGGGAATGGTTTTGCCAAGGATAAGGTGAACAAGTACGAGTGCTTAACTAGTGAAAGAGACAATGGTTACGATGATTCTGCTTATGAGAGTGATGAAAACAGCACAGACACCGACTCTTATCCAGCTCCAAAGGCTTACAGCAACAGGAACATCAGTGGCCAAAAGGGGAAGAAGAAATTGAAGTCAAAGAAAAGCAAGGCACATGAGTGCCCAATCTGCAACAAAATTTTCAGGTCAGGCCAAGCCTTGGGGGGTCACAAGAGATCGCATTTCATTGGAGGTTCTGAAGAGAACACCCTTGTGATAAGGCCAGGTGCTCCTGCTGTTCCTTGTCTCATTGATCTCAACCTACCTGCACCAGTTGATGAATAG 1515 0.4396 MMSYQSMEERKFVCKYCSKRFPCGKSLGGHIRTHMMNENSALGNAERNNATNAMFKLNGGGKRKRDLGSEENGGGASRGNYNVIYGLRENPKKTTRFVHSNSTMQLEKFCKECGKGFLSLKALCGHMACHSEKDKGANRFDSSSSGFAEKQKLVMDSQSDTETSTPRRSKRARFKTLSSSNNQGQSSVSEVEQGQEEVARCLMMLSKDSSYKGRFALFTESSDNNSAVLEAKSPSPETKVTTMNSNGKNLMSSAYVGKKLEQRKDLKFKSAQVGYDSDNSDSGYFRYGPKEVDSTDSNNGNEVKSSKVGYLSGFEDYDVESRKMLSRGRSRNTEFKKFVLEDWENDRQDGGAARKFDSKKFKKSNYDSLGQNLGGVSSRKMGNGFAKDKVNKYECLTSERDNGYDDSAYESDENSTDTDSYPAPKAYSNRNISGQKGKKKLKSKKSKAHECPICNKIFRSGQALGGHKRSHFIGGSEENTLVIRPGAPAVPCLIDLNLPAPVDE* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01299 504 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 7 504 - -
Lapu2g01299 504 MobiDBLite consensus disorder prediction 175 192 - -
Lapu2g01299 504 SMART c2h2final6 12 34 IPR013087 -
Lapu2g01299 504 SMART c2h2final6 108 130 IPR013087 -
Lapu2g01299 504 SMART c2h2final6 449 471 IPR013087 -
Lapu2g01299 504 Pfam C2H2-type zinc finger 110 132 - -
Lapu2g01299 504 Pfam C2H2-type zinc finger 448 471 - -
Lapu2g01299 504 Pfam C2H2-type zinc finger 12 35 - -
Lapu2g01299 504 MobiDBLite consensus disorder prediction 134 192 - -
Lapu2g01299 504 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Lapu2g01299 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Lapu2g01299 504 ProSitePatterns Zinc finger C2H2 type domain signature. 451 471 IPR013087 -
Lapu2g01299 504 Gene3D Classic Zinc Finger 2 66 - -
Lapu2g01299 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 449 471 IPR013087 -
Lapu2g01299 504 MobiDBLite consensus disorder prediction 414 434 - -
Lapu2g01299 504 MobiDBLite consensus disorder prediction 404 445 - -
Lapu2g01299 504 SUPERFAMILY beta-beta-alpha zinc fingers 8 37 IPR036236 -
Lapu2g01299 504 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Lapu2g01299 504 MobiDBLite consensus disorder prediction 140 162 - -
Lapu2g01299 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 39 IPR013087 -
Lapu2g01299 504 SUPERFAMILY beta-beta-alpha zinc fingers 109 471 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01299 Lapu-Chr2 23715175 23717968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01299 5 504 C2H2 Transcription Factor Family AT1G26610 40.892 1.34e-95 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu2g01299 zf-C2H2_6 1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01299 - - gmx:100805520 704.516