Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01274 ATGCTAAAAGTAAAATCTTTGCAGAAACTTCCCAAGAAATTTACTAGAAAATACGGAGATGGTGTATCAAACCCTGTGTTTCTCAAGCCTCCAGATGACACTGAATGGAAAATATACTGGACCAAGCATGATGGTGATATTTGGTTTCAAAAGGGTTGGAAGGAGTTTGTCACCTATTATTCTCTAAGTCATGGTCATTGGTTGTTCTTTAAATACAAAGGAACATCTCATCTTGGCGTGCGCATATTTGGCAGTGGTGCCCTTGAAATAGTCTATCCTCCCCATCCTGAGAATCTTGCTGAGATTGATGATGATTCTGTTGAAACTTGGCATGAGCAATTTTCTTACCAAAAGACTAGAGTTAAACCAACAGTGTCATCTCCTCAACCTTGTAAGAAAATGAAGAATAGCATAACTACAACTACAAATGTTGAAAGGTTACCCAATGAGATAACCTTGCATCAGCATGTCCAAACTATAGAAAATGATGGTAAAGACATTTTTAACACCAAATGTCCAAAACTGGAGCAGATAACTTCTACAAAGATAGCCTCAACGTTCAGATCAGGACTTCCCTCTTTCACAGTTTTCATGAAATCATCATTTATTAATGGAGATTACCTGGAAATACCCCAGAATTTTGCAGAAAAATATTTTGAGAAACCACATTTAGTCCTCATCTTTGAGGTATTGGATGGGAGAACATGGTATGTTATTTATACCGCTCCTAGAATTAATGGAGGATGGCAGAAATTTGCATCAGAAAACAAGTTGAATGTGGGGGATGTCTGTGTTTTTGAGATGATACAGAAGATACAGGGCCTCGCTTTCAGAGTTTCAATCGTTCGAGGTTCAGAGGAACCAAGTTGCCCCATTTCAGAAGGTGGGACTGCAAGTCAAAGATCTTCACAGTTGGAAAGCGACTTCAATTCAAGGATGATATCAGACACACCTCTTAAAGAAGCTAGCAAATTCACATCAGAAAATCCTTTTTTCATGGTTACTTTAACGCTAAGGCAGAAGTCAAAGATGGTTAGATCCCCGTGCTTAAATGCTAACACAAACCCATCAAGATCAACTTTGGCAATCGCCATTCTCCAGAAAAAGACCCAAGACATTCAAGCTGCACAAGCTTATGACATAACATCCAATGATGGAGTTCCGTGTGATCATATCTCCAACAAGGATTCTGCCAAACATCTTCTTGGCAGTGTCATATCTCCCTTTTCATCAAACTATCACCAAATTCATGGTGAAGTTATCCAAAATGTTGGAGAAAACGTGTATGGAAATGTCAATCGAGTGACACATGTGCCGAATGGGTTTTCCGAAAAGTACATCTTAAAGAAGAAGCACGTGATGACAATGCTCCAGTTTAGAATGACAATGTGGCCTGTAAAGCTTGTATTTCATGGATATGGTAATTCATTTTCTGCTGGTTGGACTTCATTTGCAAGAGACAACAAACTGCAACCAGGAGACGTTTGTATCTTTGAGCTCTTGAATAGACACAATGTAACATTTCGTGTCCATGTTTTCAAAGGTCAGAGTAAGATAATGTGA 1563 0.3884 MLKVKSLQKLPKKFTRKYGDGVSNPVFLKPPDDTEWKIYWTKHDGDIWFQKGWKEFVTYYSLSHGHWLFFKYKGTSHLGVRIFGSGALEIVYPPHPENLAEIDDDSVETWHEQFSYQKTRVKPTVSSPQPCKKMKNSITTTTNVERLPNEITLHQHVQTIENDGKDIFNTKCPKLEQITSTKIASTFRSGLPSFTVFMKSSFINGDYLEIPQNFAEKYFEKPHLVLIFEVLDGRTWYVIYTAPRINGGWQKFASENKLNVGDVCVFEMIQKIQGLAFRVSIVRGSEEPSCPISEGGTASQRSSQLESDFNSRMISDTPLKEASKFTSENPFFMVTLTLRQKSKMVRSPCLNANTNPSRSTLAIAILQKKTQDIQAAQAYDITSNDGVPCDHISNKDSAKHLLGSVISPFSSNYHQIHGEVIQNVGENVYGNVNRVTHVPNGFSEKYILKKKHVMTMLQFRMTMWPVKLVFHGYGNSFSAGWTSFARDNKLQPGDVCIFELLNRHNVTFRVHVFKGQSKIM* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01274 520 SUPERFAMILY DNA-binding pseudobarrel domain 434 514 IPR015300 -
Lapu2g01274 520 SUPERFAMILY DNA-binding pseudobarrel domain 188 283 IPR015300 -
Lapu2g01274 520 PANTHER B3 DOMAIN-CONTAINING 313 510 - -
Lapu2g01274 520 Gene3D - 3 86 IPR015300 -
Lapu2g01274 520 Pfam B3 DNA binding domain 194 284 IPR003340 GO:0003677
Lapu2g01274 520 Pfam B3 DNA binding domain 9 82 IPR003340 GO:0003677
Lapu2g01274 520 Pfam B3 DNA binding domain 437 515 IPR003340 GO:0003677
Lapu2g01274 520 Gene3D - 175 286 IPR015300 -
Lapu2g01274 520 SUPERFAMILY DNA-binding pseudobarrel domain 8 85 IPR015300 -
Lapu2g01274 520 CDD B3_DNA 192 283 IPR003340 GO:0003677
Lapu2g01274 520 Gene3D - 315 516 IPR015300 -
Lapu2g01274 520 CDD B3_DNA 438 514 IPR003340 GO:0003677
Lapu2g01274 520 ProSiteProfiles B3 DNA-binding domain profile. 421 516 IPR003340 GO:0003677
Lapu2g01274 520 SMART B3_2 193 285 IPR003340 GO:0003677
Lapu2g01274 520 SMART B3_2 1 86 IPR003340 GO:0003677
Lapu2g01274 520 SMART B3_2 423 516 IPR003340 GO:0003677
Lapu2g01274 520 ProSiteProfiles B3 DNA-binding domain profile. 193 285 IPR003340 GO:0003677
Lapu2g01274 520 CDD B3_DNA 10 83 IPR003340 GO:0003677
Lapu2g01274 520 ProSiteProfiles B3 DNA-binding domain profile. 1 86 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01274 Lapu-Chr2 23029757 23033514 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01274 435 514 B3 DNA Binding Superfamily AT3G18990 35.000 9.83e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu2g01274 B3 6.7e-15 CL0405