Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01273 ATGACTTTCCCATGCAATGTGCATTCCGTGTCCACTGCAATCCATTTCTTTAAGATTATCCCCAAAACAAGTCTTGCTGATGGGAAACTGAAACTTCCAAGAAATTTCACTTCAAAATGTGGAGATGGAATGTCAAACCCGGTGTTTCTCAAGCCTTCAGATAATAATGAATGGAAAATATATTGGACTAAGCATGATGGTGAGATGTGGTTTCAAAAGGGATGGAAGGAATTTGTCATATGTTATTCTCTAGATTATGGTCACTTGCTGTTATTTGAATATGTTGGAATTTCTCATTTTGATGTGCACATATTTGACAACACTGCACTTGAAATAGAGTACCCTTCCCATTTAACTCATGACAACCCTGAAAAAATTAGTGATGATTCTGTTGAAAACTTGGATGAGCAATGTGGTGATGGAAAGAGCAAGCTTGTACAAATAAGTGATGATTCTGTTGAAATTTTGGATGAGCAATGTCATGATGGAATGAACAACATTGTGGAGATTAGTGATTATTCAATTGGAATCTTGGATGAGCAATATTGCCTAAAGACTGAGGTGAAATATGCAATATCTCCTCAATCCTGTAAGAAAATGAAAGATAGCGTAACTACAAATGTTGGACGAAGTCTCAATGGGGTAAACTTGCATCAGCATGATCAAACTAGAAGTACTATTCTTCAAGGGAAGCAAGAATTAGATGAAGAAAAGGGTAAAGGCAATTTTCATACTGAATACGAAAGGGTGGAACAATTAACTTCCGCGGCTTTAGATAAAGTGACAACTTTCAAATCTGAACATCCCTCTGTCTTGCTTGTTATGAGACATCCTCTATAG 840 0.3667 MTFPCNVHSVSTAIHFFKIIPKTSLADGKLKLPRNFTSKCGDGMSNPVFLKPSDNNEWKIYWTKHDGEMWFQKGWKEFVICYSLDYGHLLLFEYVGISHFDVHIFDNTALEIEYPSHLTHDNPEKISDDSVENLDEQCGDGKSKLVQISDDSVEILDEQCHDGMNNIVEISDYSIGILDEQYCLKTEVKYAISPQSCKKMKDSVTTNVGRSLNGVNLHQHDQTRSTILQGKQELDEEKGKGNFHTEYERVEQLTSAALDKVTTFKSEHPSVLLVMRHPL* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01273 279 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Lapu2g01273 279 PANTHER B3 DOMAIN-CONTAINING 8 205 - -
Lapu2g01273 279 Gene3D - 9 109 IPR015300 -
Lapu2g01273 279 Pfam B3 DNA binding domain 16 107 IPR003340 GO:0003677
Lapu2g01273 279 SMART B3_2 16 108 IPR003340 GO:0003677
Lapu2g01273 279 SUPERFAMILY DNA-binding pseudobarrel domain 12 107 IPR015300 -
Lapu2g01273 279 CDD B3_DNA 15 106 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01273 Lapu-Chr2 23025058 23026315 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01273 12 157 B3 DNA Binding Superfamily AT1G49475 37.671 2.26e-19 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu2g01273 B3 3.5e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01273 - - ccaj:109791753 301.597