Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01271 ATGACTTCACCAAGCAACCCCTTTCCCACTGCAGTTCATTTCTTTAAGATTATCCTCAGACCAAGCCTTGCACATGGAATACTTAATCTTCCAAAAAAGTTCACTAGAAAACATGGAGATGGAATGTCAAATCCGGTGTTTCTTAAATCTCCTGATAGTATTGAATGGAAAATATATTGGACCAAGTGTGATGGTGAGATTTGGTTTCAAAAGGGATGGAAGGAGTTTGCCACATACTATTCTCTAGATCATGGTCATTTGCTGTTCTTTGAATACGAGGGAACTTCTCATTTTGATGTGCACATATTTGACAGTAGTGCCCTCGAAATAGACTATCCTTCCCTCACTACTCATAATAGAAAGGACAAGCTTATCCAAATTAGTGATGATTCCGGTGAAAATTTATTGGAGCATTTTCCATGTCAAAATACTAGTGTGAAACCAACTCTGTCTTCTCTTCAACCTTGTAAGAAAATGAAAAATAGCATATCCACAAATGTTGTGAGAAGCCCCAACTGGATAAATTTGCATCAGCATGTCCAAATTAGAAGTTCTATCTCTCAAGAGGAAAAATCTGTAAAGAAAAAATTAGATGAAGTTGAAGGTAAAGACACTTTTAACAGTGAATGCTCAGAAGTGGAGCAGTTAACATCTGCGGCTTTAAAGAAAGCCATAACTTTCAAATCTGAACACCCCTCTTTTCTGCTTGTCATGAAGGAAGCCTATATTAGTGGATATTGCCTGAAAATACCACTACATTTTGTAGAAAAATATATGAAGAATGCATATGCAGTTGTCAACCTTGAGGTAGTGGATGGGAGAACATGGCCTGCTATTTATTCTGCTCCTAGAATTAATGGGGGATGGAAGAAATTTGCATCAGAAAACAATTTGAATGTGGGGGATGTTTGTGTTTTTGAGATGATCCAGAAGATACAGGGCCTTGCTTTTAAAGTTTTTATCTTTCGAGGTGCAGAAGAACCAAGTTGCCCCATTTCACAAGGTGGAAGTTCAAGTCAAGGACTTTCACGGTTGGAAAGTCACTTCAAGTCAAAGAACTTAAGCAGAGCTCTTAAAGAAGCTAGCAAATTCAAATCAGAAAATCCCTTTTTCATGGTTACTTTACAATCGAAGGAAAACACAACCAGATTCCTGTGTGTGCCTATCTACTTTGCGAGGAAGTATTTTATAAACTTCAATCAGTGTGTGATAATGATACAGTTCAGAAATACATTGTGGCCAGTGAAGTTTGTATCTTATAATTCTTCATCTTTAGCTAAGCTCACTGCTGGTTGGGCCTTATTTGCAAGAGAAAATAGCCTGAAACCTGGAGATATTTGTATCTTTGAGCTTGTAAATAGAAAAGATGCAACACTTGGTTTT 1383 0.3731 MTSPSNPFPTAVHFFKIILRPSLAHGILNLPKKFTRKHGDGMSNPVFLKSPDSIEWKIYWTKCDGEIWFQKGWKEFATYYSLDHGHLLFFEYEGTSHFDVHIFDSSALEIDYPSLTTHNRKDKLIQISDDSGENLLEHFPCQNTSVKPTLSSLQPCKKMKNSISTNVVRSPNWINLHQHVQIRSSISQEEKSVKKKLDEVEGKDTFNSECSEVEQLTSAALKKAITFKSEHPSFLLVMKEAYISGYCLKIPLHFVEKYMKNAYAVVNLEVVDGRTWPAIYSAPRINGGWKKFASENNLNVGDVCVFEMIQKIQGLAFKVFIFRGAEEPSCPISQGGSSSQGLSRLESHFKSKNLSRALKEASKFKSENPFFMVTLQSKENTTRFLCVPIYFARKYFINFNQCVIMIQFRNTLWPVKFVSYNSSSLAKLTAGWALFARENSLKPGDICIFELVNRKDATLGF 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01271 461 PANTHER B3 DOMAIN-CONTAINING 353 455 - -
Lapu2g01271 461 ProSiteProfiles B3 DNA-binding domain profile. 370 461 IPR003340 GO:0003677
Lapu2g01271 461 Gene3D - 350 460 IPR015300 -
Lapu2g01271 461 Gene3D - 213 326 IPR015300 -
Lapu2g01271 461 SUPERFAMILY DNA-binding pseudobarrel domain 366 455 IPR015300 -
Lapu2g01271 461 SUPERFAMILY DNA-binding pseudobarrel domain 11 106 IPR015300 -
Lapu2g01271 461 SUPERFAMILY DNA-binding pseudobarrel domain 227 323 IPR015300 -
Lapu2g01271 461 CDD B3_DNA 13 104 IPR003340 GO:0003677
Lapu2g01271 461 ProSiteProfiles B3 DNA-binding domain profile. 233 325 IPR003340 GO:0003677
Lapu2g01271 461 Gene3D - 9 107 IPR015300 -
Lapu2g01271 461 CDD B3_DNA 232 323 IPR003340 GO:0003677
Lapu2g01271 461 Pfam B3 DNA binding domain 370 459 IPR003340 GO:0003677
Lapu2g01271 461 Pfam B3 DNA binding domain 14 105 IPR003340 GO:0003677
Lapu2g01271 461 Pfam B3 DNA binding domain 234 323 IPR003340 GO:0003677
Lapu2g01271 461 CDD B3_DNA 370 455 IPR003340 GO:0003677
Lapu2g01271 461 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Lapu2g01271 461 SMART B3_2 370 458 IPR003340 GO:0003677
Lapu2g01271 461 SMART B3_2 234 326 IPR003340 GO:0003677
Lapu2g01271 461 SMART B3_2 14 106 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01271 Lapu-Chr2 23001453 23004049 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01271 356 459 B3 DNA Binding Superfamily AT3G18990 35.238 1.73e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu2g01271 B3 6.6e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01271 - - ccaj:109794243 544.273