Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01236 ATGCTTCTTGTCTTGATTGCAGCTCAAGGGGAACAACACCCTGATGATGAATGTCCTCCCTATCCTCAACCATGTCGGTATCTGGGGGAAATCTTGTTCCCCTTCACAACAAGTTCCAATCCAAAATGTGGGTTGCAAATAAGGGGCTGTGACAACCACAGTGCAGATATAGAAATCTCACTCACAGACCAAAATTGGTATAAAATTGATGCCATATTTTCCGGTTACTACCTCACTGACACTTCAATTATCATCCATTACCCTGATTTTGACACCATTGCTGGAGAGCCGCATAAAGAGCCTTTTAAGATAAAAGAAAAGCCCTTCAAGATCGGTAACAATATCACCTTCTTCGGATGCATTCGGAACCCCTATGGCAACGAAATCCCTCCCAACATGTCCTTTTATAGACAATGCCTTAACCACGACATGTACTTCAGTTTTTCCCATGCTCTCAACTATCCCTTGCCCATCATGCCATTCGCATGCTTAGCTTTTCAGTTTCGTCAATTGGGTTCCTTTCACACTTGCCCTTCATATACATTTCTATTTTCGTTTCTTGAAATCCAGTTGAACATACCCAAACATTGCAAATACTGTTATCCTCCCCAATGTCAGCTTCAGCTCGATGAGGGCCAACGCTTCGATTGTGACCCATACAATCATCATGAACAACCGCCTTCTCTTTCCCCGTCGTCGCTTTCCCCTAAACCTGCATCGTCGAAGGCTAAGAAAATAGGAAGAAACAAAAATTCAGGTCTCCAAAACAAATCAAGAAGCGCTTTTGCTTCTTCCTTCACAAATACAACGGCCATAGAAAGTGGAGATGTCTACTTTGGGATCCCTGTCTTCTCCCACGAGGAGCTCCGAAAGGCAACCAACAATTATGATCAAGCTAGGAAGCTTGGTGAAGGAGGCTTTGGAACTGTTTACTTTGGAAAACTTGGAGATGGTCGTGAAGTTGCAGTGAAGCGCCTGTTCGAACGCAAATACAGGCCAGTGGAGTCATTCATCAATGAGATTCAGGTCCTCACACGTCTGCGCCACAGAAACCTGGTGTCCCTCTACGGCTGCACTTCGCGTCACAGCCGCGACTTACAGCTAGTGTATGAGTACATCCCCAATGGCACTGTTAGTTCTCATCTTCATGGTGATCAAGAAAATTCAAGCTTTTTGACATGGCATTTGAGAATGAAAATTGCCATAGAAACTGCTAGTGCATTGACTTATCTCCACGCTTCAGACATCGTTCACCGGGATGTGAAACCCAGCAACATTCTCCTGGACAATGAGTTTGATGCTAAGGTTACGGATTTTGGTCTCTCAAGATTGTTCCCAGATGATGTCACTCATGTTTCCACTTCTCCAATCGGGACCCCGGGTTATGTTGATCCGGATTATCGCCTATGCTTCCAGTTGACAACAAAGAGCGATGTATACAGCTTTGGGGTTGTGCTTGTTGAGTTGATATCATCTCTCAAAGCAGTTGATACGAATAGAAACAGGGAAGACATTAAGTTGGCAAATCTTGCCGTTAGGAAGATTCAAAAGGGTGCCATTTCTGAGTTGGTTGATCCTTCCCTTGGTTTCCAGTCAGATGAGAAATTAAAAATGATGATAGGTTCAGTTGCAGAATTGGCTTTTCAGTGTCTGCAAGAGGACAGGGAATTGAGACCCTCTATGGGTGAAGTATTGGAGGTGCTGGAGAGAATTCACAGTGGCAGCGATGAGCCACCGAATCAGGAGGGAATTATTGTTCATGGTGCTGCTACCAGGGCTTCTCAAAGCTATGCTCAACCACCTCTTCCAAACACTCTGATGAGCCCACAACAGCGACTCTGCAAAACACACTGA 1854 0.4477 MLLVLIAAQGEQHPDDECPPYPQPCRYLGEILFPFTTSSNPKCGLQIRGCDNHSADIEISLTDQNWYKIDAIFSGYYLTDTSIIIHYPDFDTIAGEPHKEPFKIKEKPFKIGNNITFFGCIRNPYGNEIPPNMSFYRQCLNHDMYFSFSHALNYPLPIMPFACLAFQFRQLGSFHTCPSYTFLFSFLEIQLNIPKHCKYCYPPQCQLQLDEGQRFDCDPYNHHEQPPSLSPSSLSPKPASSKAKKIGRNKNSGLQNKSRSAFASSFTNTTAIESGDVYFGIPVFSHEELRKATNNYDQARKLGEGGFGTVYFGKLGDGREVAVKRLFERKYRPVESFINEIQVLTRLRHRNLVSLYGCTSRHSRDLQLVYEYIPNGTVSSHLHGDQENSSFLTWHLRMKIAIETASALTYLHASDIVHRDVKPSNILLDNEFDAKVTDFGLSRLFPDDVTHVSTSPIGTPGYVDPDYRLCFQLTTKSDVYSFGVVLVELISSLKAVDTNRNREDIKLANLAVRKIQKGAISELVDPSLGFQSDEKLKMMIGSVAELAFQCLQEDRELRPSMGEVLEVLERIHSGSDEPPNQEGIIVHGAATRASQSYAQPPLPNTLMSPQQRLCKTH* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01236 617 CDD STKc_IRAK 302 571 - -
Lapu2g01236 617 FunFam Wall-associated receptor kinase-like 20 373 581 - -
Lapu2g01236 617 MobiDBLite consensus disorder prediction 220 256 - -
Lapu2g01236 617 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 9 607 IPR044652 GO:0004672
Lapu2g01236 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Lapu2g01236 617 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Lapu2g01236 617 Pfam Protein kinase domain 296 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g01236 617 Gene3D Transferase(Phosphotransferase) domain 1 373 577 - -
Lapu2g01236 617 ProSiteProfiles Protein kinase domain profile. 296 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g01236 617 MobiDBLite consensus disorder prediction 596 617 - -
Lapu2g01236 617 SUPERFAMILY Protein kinase-like (PK-like) 277 585 IPR011009 -
Lapu2g01236 617 Gene3D Phosphorylase Kinase; domain 1 269 372 - -
Lapu2g01236 617 MobiDBLite consensus disorder prediction 225 256 - -
Lapu2g01236 617 SMART serkin_6 296 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01236 Lapu-Chr2 22410889 22413216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01236 272 587 Receptor kinase-like Gene Family AT1G25390 60.436 8.88e-132 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lapu2g01236 Pkinase 7.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01236 - - var:108334729 869.766