Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01224 ATGAGTGACAAAGAAAAGTTTGAGGTGGATAGAAACGAGGATCCTATGGGTTATTCTAGTGGTATGCACTCGGATTGGAGATTTGGCGGTGCAAATCTTGCAAATTCTTCTGCAGGTTTGGTTGCCATGGGAAATTCTATGAATGTCAGCAGAGGGGATTTGATTGGTTCTTCTTCATGTTCCTCTGCTTCAATGGTGGACACATTTGGTCCAAGCTACTGGGACAACAACACCGGCTCCCAAAACCTGGGATTTTGTGACATTAATGTCCACAACAACGGGGGTTCTTCAAATACTGCTGGAATAAGAAAAGATGGCTTTGGCTTTGGAAGAGCAGGTCAGGATCATCATGGGACACTTGAAATGGGTTGGAACCCAGCTAATTCCATGTTACCAAATGGCCCAGGGGTGTTTCCGCACGGTTTATCTCAGTTTCCAACTGATTCTGGATTCATTGAGAGAGCTGCAAGATTCTCATGCTTCAGCGGAGGGAATTTTACTGATATGGTGAACTCATATGGGATTGCTCAATCAACGGGGCTTTATGGAGCAAGAGATGCTATTGTAGGCCACGGGTTGAAATCTGTAACTGGAGGGCAATCTCAAGGAGGTGATATGAATGTAGTTGAAGCTGCAAAAGATTTGTCTCCATCTGTTGAGCATCTGGCTTCTAAAGGAAGCCCTCTCAAGAGTGATAAAAGAAGTGAAGGTCATGCTATGTCTCAAGATGATGGGAAGGTATCTCTTGTTAGGCCTGCTAATGAGTCTGATAGAGCTGAATCTAGTGATGATGGTGGTGGCCAGGATGATTCTCCATTGTTGGAAGGTACTAGTGGAGAGCCTTCTATCAAAGGGCTAAACTCAAAGAAAAGGAAAAGAAGTGGTCAGGATGCTGATAATGATAAAGGCAATGGAGCTCCAGAAATTCCTAATGAAGCTACAAAGGACAACTCTGAGAACCAACAGAAGGTAGACCATCAACCAGCAACCAAGCCTTCTGGGAAGAATGCCAAATTGGGGTCTCAAGCTTCTGATCTACCTAAGGAGGAATACATACATGTTAGGGCTCGCCGGGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTTAGGAGGGAAAAGATAAGTGAAAGGATGAAGTTTCTTCAAGACCTTGTACCGGGATGCAGCAAGGTCACTGGCAAAGCAGTAATGCTAGATGAAATCATCAACTATGTACAATCACTTCAGAGACAGGTTGAGTTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGTTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATGTTCTTCAACATCGGCCCAATCCTTCGTCCGGACTAGGGTTTCCTCTAGATATATCCATGGCTTTTCCTCCATTACATCCATCTCAACCAGGACTGATCCATCCAATTATTCCCAACATGGCAAACTCATCTGATATTCTTCAAAGAAACATCCATCAACAGTTAGCTCCCTTGAATGGTGGATTCAAGGAGCCAAATCAGCTATCTGGTGTATGGGAGGATGAGCTTCACAATGTCGTACAGATGAGTTTTGCAACAAGTGCTCCCCTGAGTAACCAAGATGTTGATGGTACTGTGTCAGCAAGTCAGATGAAAGTTGAACTTTAA 1644 0.4373 MSDKEKFEVDRNEDPMGYSSGMHSDWRFGGANLANSSAGLVAMGNSMNVSRGDLIGSSSCSSASMVDTFGPSYWDNNTGSQNLGFCDINVHNNGGSSNTAGIRKDGFGFGRAGQDHHGTLEMGWNPANSMLPNGPGVFPHGLSQFPTDSGFIERAARFSCFSGGNFTDMVNSYGIAQSTGLYGARDAIVGHGLKSVTGGQSQGGDMNVVEAAKDLSPSVEHLASKGSPLKSDKRSEGHAMSQDDGKVSLVRPANESDRAESSDDGGGQDDSPLLEGTSGEPSIKGLNSKKRKRSGQDADNDKGNGAPEIPNEATKDNSENQQKVDHQPATKPSGKNAKLGSQASDLPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDVLQHRPNPSSGLGFPLDISMAFPPLHPSQPGLIHPIIPNMANSSDILQRNIHQQLAPLNGGFKEPNQLSGVWEDELHNVVQMSFATSAPLSNQDVDGTVSASQMKVEL* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01224 547 Pfam Helix-loop-helix DNA-binding domain 363 411 IPR011598 GO:0046983
Lapu2g01224 547 MobiDBLite consensus disorder prediction 217 346 - -
Lapu2g01224 547 SMART finulus 366 416 IPR011598 GO:0046983
Lapu2g01224 547 MobiDBLite consensus disorder prediction 285 299 - -
Lapu2g01224 547 FunFam Basic helix-loop-helix transcription factor 357 429 - -
Lapu2g01224 547 MobiDBLite consensus disorder prediction 226 241 - -
Lapu2g01224 547 MobiDBLite consensus disorder prediction 250 265 - -
Lapu2g01224 547 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 429 IPR036638 GO:0046983
Lapu2g01224 547 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 243 467 IPR024097 GO:0006355
Lapu2g01224 547 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 360 410 IPR011598 GO:0046983
Lapu2g01224 547 MobiDBLite consensus disorder prediction 311 340 - -
Lapu2g01224 547 CDD bHLH_AtBPE_like 350 435 - -
Lapu2g01224 547 Gene3D - 357 430 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01224 Lapu-Chr2 22214484 22219547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01224 56 523 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 44.906 6.68e-110 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu2g01224 HLH 7.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01224 - - gmx:100797720 965.681