Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01220 ATGGAGGATCAAATCAAGGGTCACACCGGAAGAATAAACCCTAATTCCCCCGCATGCTTAAAACTCTTCGGCTTCAGCGTGGTCCACGAAGATCTCACGGAGGACGACGAAGCTGAAACAACTGCCGTTCTGGAAGACGCGTCGGATTCAACCGCCAAGCCTACGTCACCGGACTCCGGGAGCGCCTCCGGGTTTCCGAACTCCTCCGGCGATCGGAAATACGAGTGTCAGTACTGTTGCCGCGAGTTCGCGAACTCGCAAGCTCTCGGTGGACACCAAAACGCGCATAAGAAAGAGCGGCAACAGATGAAGCGCGCGCAGTTACAAGCCACGCGAAATGCCGCCGTTTCTTTCGTTCGGAATCCGATCATCTCACCGTCGTGGGTGTACATGCCACCCCGTGCTGCGCCTCCTCCCTTCCACGTGTCGGTTTCACACGGATGCGTGTTCCCCTCGGCGAACAGCGTTATCAGTAACTGTAACGGTAGCATAGTAACGGGTGCGAGATCCGCAGGTGCAGGTGCAGGTGTGTTGCCCTATGTTGGCGGAGTAGGGGATTCGTCGTCTGCATTTTCCACGATGGGCTCTCAAGTACAGGCCCGGGCCCACTATGGGAGGGTTGATGGGCCATCTCTGAGTAAACTCTCTGCAGGGGAGGTGGGGCCCAGTTTTGATGACGGCTTCGGCTTGGACTTGCACCTTAGCCTAGCCCCGCCGTGA 720 0.5736 MEDQIKGHTGRINPNSPACLKLFGFSVVHEDLTEDDEAETTAVLEDASDSTAKPTSPDSGSASGFPNSSGDRKYECQYCCREFANSQALGGHQNAHKKERQQMKRAQLQATRNAAVSFVRNPIISPSWVYMPPRAAPPPFHVSVSHGCVFPSANSVISNCNGSIVTGARSAGAGAGVLPYVGGVGDSSSAFSTMGSQVQARAHYGRVDGPSLSKLSAGEVGPSFDDGFGLDLHLSLAPP* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01220 239 Gene3D Classic Zinc Finger 61 121 - -
Lapu2g01220 239 SUPERFAMILY beta-beta-alpha zinc fingers 70 101 IPR036236 -
Lapu2g01220 239 PANTHER ZINC FINGER PROTEIN 5 16 238 IPR044299 GO:0010090
Lapu2g01220 239 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Lapu2g01220 239 MobiDBLite consensus disorder prediction 44 70 - -
Lapu2g01220 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 101 IPR013087 -
Lapu2g01220 239 MobiDBLite consensus disorder prediction 34 70 - -
Lapu2g01220 239 FunFam Zinc finger protein 6 64 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01220 Lapu-Chr2 22110202 22111256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01220 20 238 C2H2 Transcription Factor Family AT1G68360 41.264 2.71e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01220 - - pvu:PHAVU_002G082900g 409.068