Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01210 ATGTCGGCAGCGTCGCCGACTCCGGCGACATCCACGGCTGCGCCACCGCCACAAACACCACCCTCCTCCAACACTAGTCCCTCACCGTCCAACGCCACTACTCCACCGCCGCAACAAACTCCTTCTTCCACTTCTCCTCCTCCACTAACCCCATCGCCGGCGACTCCGCCGCCTTCTCCGCCGTCACCGCCACCTAGTTCTTCTCCTCCCCTCTTGTCTGGAACACCCCCTCCATCAGTACCTCCATCATCACCACCGCCATCTTCGCCGCAGCCATCTCCTCCACCACCGTCTTCTCCGGATGCACCGCCACCGGTGCCACCGAGCTCTCCACCGCCACCTCCATCATCAGCACCAGTTCCATCAAGAAGCCCTCCACCGCCATCAAACCCTCCTAATAACACATCACCAACATTACCACCGCCACAACCATCACCCTCAGCTCCACCACCTAACAACACTCCACCACCGCCGCCGCGGAATTCACCACCTTCTCCCGCCACCACCTTGCCACCGGCCTCGCCACCACAAAATCCACCGTCTTCTCCGGCTGCACCGGCCCCCAGAAACTCCTCTAGGTCACCGCCGCCAGTAAACTCACCTCCACCAGCAGTGGATGCGCCGTCACCGAGATCATCTCCGCCGCCAGCACCTGAATCATCCAACCCTCCTTCTAGGATTAGTCCCCCTCCCACACCAAGTTCTTCACCTGCTCCACCTTCAAATTCTACGCCAAGCTCATCACCTCCATCACCTCCATCACCACCATCACCTCCATCACCACCTTCAGTTATTCAATTGGCCCCGCCACCGCCGTCCCCATCGCAAGTTTCATCGCCTCCGCCTGAGAATGGGACAGTAAACTCAAGCCCTGGTGGAGGTGGAATTGGCACTGGTGGTGTAGTGGCTATTATTGTGGTGGCTGGATTTCTACTACTTGGCTTCATTGGTGTTCTTATATGGTGCATGAGGAGGCAAAAGAGAAAGGTTCCTGTGAATGGTGGTTATGTCATGCCATCCACTCTTGCCTCATCTCCTGAATCAGATTCATCCTTTTTTAAGACACACTCCTCAGCTCCTCTTGTACAAAGTGGCTCTGGCAGTGATGTTGTGTACACACCATCTGATCCTGGTGGACTAGGCCACTCAAGGTCATGGTTTTCATATGAAGAACTAATCAAGGCCACAAATGGTTTCTCAAGTCAAAATCTTTTGGGTGAGGGCGGATTTGGTTGTGTGTATAAAGGGCACCTTCCTGATGGAAGAGAGATAGCAGTCAAACAACTGAAGATTGGTGGAGGTCAGGGAGAGAGAGAATTCAAAGCTGAAGTGGAGATTATCAGTCGCATACATCATCGCCATTTGGTTTCTTTGGTGGGATACTGCATTGAAGACAACAGAAGACTACTTGTCTATGACTACGTTCCTAACAATACCCTTTACTTTCATCTACATGGGGAAGGCCAGCCTGTGCTAGAATGGGCAAACCGTGTTAAAATTGCAGCTGGTGCAGCCCGAGGACTAGCTTATCTCCATGAAGACTGCAACCCTCGGATCATACACAGGGATATCAAGTCGTCAAACATTCTTTTAGATTTCAATTATGAAGCTAAGGTCTCAGATTTTGGCCTAGCCAAATTAGCTCTTGATGCAAATACACATATTACCACACGTGTCATGGGTACTTTTGGGTATGTTGCCCCTGAATATGCTTCAAGTGGCAAATTGACTGAGAAGTCTGATGTGTATTCTTTTGGAGTCGTGCTTTTGGAGCTAATAACCGGACGGAAGCCAGTAGATGTATCCCAACCTTTGGGAGATGAAAGCTTGGTTGAATGGGCTCGGCCTTTACTGAGTCATGCAATCGATACCGAGGAATTCAATAGTTTGGCAGATCCAAGGCTAGAAAAGAATTATATTCAGAGTGAATTGTGTTGCATGATTGAGGTTGCTGCTGCTTGTGTGCGGCATTCAGCTTCAAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAGGAGGTTCTGATCTAACTAATGGAATGCAACTTGGGGAAAGTGAGGTGTTTGACTCTGCACAGCAATCTGAAGAAATAAGATTATTTCGGAGGATGGCATTTGGTAGTCAAAATTATAGCACAGACTTCTTTAGCCGTGCTAGTTTGAATCCATGA 2181 0.5039 MSAASPTPATSTAAPPPQTPPSSNTSPSPSNATTPPPQQTPSSTSPPPLTPSPATPPPSPPSPPPSSSPPLLSGTPPPSVPPSSPPPSSPQPSPPPPSSPDAPPPVPPSSPPPPPSSAPVPSRSPPPPSNPPNNTSPTLPPPQPSPSAPPPNNTPPPPPRNSPPSPATTLPPASPPQNPPSSPAAPAPRNSSRSPPPVNSPPPAVDAPSPRSSPPPAPESSNPPSRISPPPTPSSSPAPPSNSTPSSSPPSPPSPPSPPSPPSVIQLAPPPPSPSQVSSPPPENGTVNSSPGGGGIGTGGVVAIIVVAGFLLLGFIGVLIWCMRRQKRKVPVNGGYVMPSTLASSPESDSSFFKTHSSAPLVQSGSGSDVVYTPSDPGGLGHSRSWFSYEELIKATNGFSSQNLLGEGGFGCVYKGHLPDGREIAVKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIEDNRRLLVYDYVPNNTLYFHLHGEGQPVLEWANRVKIAAGAARGLAYLHEDCNPRIIHRDIKSSNILLDFNYEAKVSDFGLAKLALDANTHITTRVMGTFGYVAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDVSQPLGDESLVEWARPLLSHAIDTEEFNSLADPRLEKNYIQSELCCMIEVAAACVRHSASKRPRMGQVVRAFDSLGGSDLTNGMQLGESEVFDSAQQSEEIRLFRRMAFGSQNYSTDFFSRASLNP* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01210 726 FunFam proline-rich receptor-like protein kinase PERK8 475 686 - -
Lapu2g01210 726 Pfam Protein tyrosine and serine/threonine kinase 402 670 IPR001245 GO:0004672|GO:0006468
Lapu2g01210 726 MobiDBLite consensus disorder prediction 1 292 - -
Lapu2g01210 726 MobiDBLite consensus disorder prediction 10 279 - -
Lapu2g01210 726 SUPERFAMILY Protein kinase-like (PK-like) 381 670 IPR011009 -
Lapu2g01210 726 ProSitePatterns Protein kinases ATP-binding region signature. 405 427 IPR017441 GO:0005524
Lapu2g01210 726 FunFam Proline-rich receptor-like protein kinase PERK8 372 474 - -
Lapu2g01210 726 CDD STKc_IRAK 405 675 - -
Lapu2g01210 726 Gene3D Phosphorylase Kinase; domain 1 379 474 - -
Lapu2g01210 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Lapu2g01210 726 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 310 707 IPR047117 -
Lapu2g01210 726 ProSiteProfiles Protein kinase domain profile. 399 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g01210 726 SMART serkin_6 399 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g01210 726 Gene3D Transferase(Phosphotransferase) domain 1 475 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01210 Lapu-Chr2 21768873 21779339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01210 289 722 Trihelix Transcription Factor Family AT5G38560 67.727 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lapu2g01210 PK_Tyr_Ser-Thr 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01210 - - vun:114173712 835.099