Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01208 ATGGAGAAAGATCACAACTATTCGGCACCAATACCCATGCCTCCAAGCTTCAACACACTTGACTACTCTCTAGATCACCACCTTTATCCACCAAATCAGCATCAGCAGCACCTCATGAAGTTCCAAGCTTCTGGTGATGAAAACAACAGTGGATCGATGGTGGATTACATGCCTCAAACACCACCACCACCGCATGGTTTTTATGGTGGTTCTAGCACTAGCGCAATATCCTATGATAAACTGAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCTAAGTTGGCTTTGAATCAAACAAAAAGCTGTGAAGAATCCGGGATAGATCCCGTTTACTTTCTCAAGTTTCCTGTGTTAAACGACAAGATGGAAGAGGAGCAGAACCTGATGGTGAATGATGACCCTGATGGTGAAGCAGAAAATGATGATGAGAGGTTCAACTTGGTGGATGTGGAGGACAAGTCAAGGGTTGGTGAAGAGGGAATGATGATGAGAGAAGATGAAGAGACTCGGATTTCTGATGACAACAATTCCGTGCAGATTCGGTTTCTGGGTCAGGAAGAGACTCAGAAGAATGCAGGAGTGCAGGAAAACAAGAACAAGAGGAAGAGACCAAGAACTGTCAAGACAAGTGAAGAAGTTGAGAGCCAGCGGATGACCCACATAGCAGTTGAGAGAAATCGTAGGAAGCAAATGAATGAGCATCTTCGTGTGCTTAGATCACTCATGCCTGGTTCATACGTCCAAAGGGGTGATCAAGCTTCTATTATTGGGGGAGCTATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAGTGTTTGGAGTCACAAAAGAGGAGGAGGCTACTTGGAGAAGCTCAAGCAAGACAAGTTGGGGATCCCTCCCTTGCACAACAACAACAACAACCTCCTTTCTTTCCACCTTTGCCAATTCCAAATGAGCAGATGAAGCTTGTGGAGTTGGAGAGTGGACTTCGTGAAGAAACCGCGGAGAGTAAGTCTTGTTTTGCTGATGTTGAAGTGAAGCTTCTAGGATTTGATGCCATGATCAAAATCCTATCAAGGAGGAGGCCAGGACAGTTGATCAAAACCATTGCTGCACTTGAAGATCTTCAACTAATAATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTAAAGGTGGCTAGTGATTCAAGGTTCACCGCAGAAGATATAGCCAGTTCGGTTCAGCAGATATTCAATTTTATCCATGCAAACACTAGCATGTGA 1275 0.4408 MEKDHNYSAPIPMPPSFNTLDYSLDHHLYPPNQHQQHLMKFQASGDENNSGSMVDYMPQTPPPPHGFYGGSSTSAISYDKLSFADVMQFADFGPKLALNQTKSCEESGIDPVYFLKFPVLNDKMEEEQNLMVNDDPDGEAENDDERFNLVDVEDKSRVGEEGMMMREDEETRISDDNNSVQIRFLGQEETQKNAGVQENKNKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQARQVGDPSLAQQQQQPPFFPPLPIPNEQMKLVELESGLREETAESKSCFADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFNFIHANTSM* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01208 424 PANTHER TRANSCRIPTION FACTOR FAMA 118 415 IPR044283 GO:0003700|GO:0010052
Lapu2g01208 424 Pfam Helix-loop-helix DNA-binding domain 218 269 IPR011598 GO:0046983
Lapu2g01208 424 MobiDBLite consensus disorder prediction 195 219 - -
Lapu2g01208 424 Gene3D - 208 283 IPR036638 GO:0046983
Lapu2g01208 424 FunFam Basic helix-loop-helix transcription factor 208 283 - -
Lapu2g01208 424 MobiDBLite consensus disorder prediction 187 219 - -
Lapu2g01208 424 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 217 283 IPR036638 GO:0046983
Lapu2g01208 424 SMART finulus 223 274 IPR011598 GO:0046983
Lapu2g01208 424 CDD bHLH_AtFAMA_like 220 287 - -
Lapu2g01208 424 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 217 268 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01208 Lapu-Chr2 21699195 21701016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01208 43 424 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 60.386 1.73e-150 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu2g01208 HLH 9.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01208 K26213 - gmx:100813515 686.797