Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01206 ATGTTCCAACTTTTCCTAAACCACAACCTAAACACATACCTTTCCATACTTAATCAACAACACAAAATCTTCAACATGTTCAAATACCTAACTTCAATTTACACTCTTCTCAAATGGGTTTTAGAGTTTCTTCTCTACAAACCCTTTTTTTACACGCTTCATGTTTCTGAGCCGTCCATAAATGTTGGAGCTGAACTCAGGAAACTCCATTATGAATTCACCTCTGGCTCAGAAGGACACGTGGATTGTGCTGTGTGTCTCTCCAAAATCGGAGGAGATGATGAGGAGAACAGAGTTTTGAGATGTGGGCATGTGTTTCACAAAGGTTGTCTGCAAAAATGGGTTTGTTTGAAGAACGCCACGTGTCCTCTTTGCAGAGGTTCAGTGTTTCCAACAGGGCCTGTCACAGGTTCTGGAGCTGAGATTTTGTTGTTTCAGTTTTGTTCTGTCCGAAAGGATGAACGTGAGACATGGTGGCTACGCTGA 486 0.4198 MFQLFLNHNLNTYLSILNQQHKIFNMFKYLTSIYTLLKWVLEFLLYKPFFYTLHVSEPSINVGAELRKLHYEFTSGSEGHVDCAVCLSKIGGDDEENRVLRCGHVFHKGCLQKWVCLKNATCPLCRGSVFPTGPVTGSGAEILLFQFCSVRKDERETWWLR* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01206 161 ProSiteProfiles Zinc finger RING-type profile. 83 126 IPR001841 -
Lapu2g01206 161 SMART ring_2 83 125 IPR001841 -
Lapu2g01206 161 SMART ringv_2 82 126 IPR011016 GO:0008270
Lapu2g01206 161 SUPERFAMILY RING/U-box 82 132 - -
Lapu2g01206 161 Pfam Ring finger domain 82 126 IPR001841 -
Lapu2g01206 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 132 IPR013083 -
Lapu2g01206 161 PANTHER - 54 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01206 Lapu-Chr2 21563019 21566238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01206 82 126 C3H Transcription Factor Family AT2G04240 62.222 3.01e-13 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01206 - K16282 vvi:104878972 110.923